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Summary

Next steps

  • Q/A session
  • Exercises for the interested.

Today's topics

  • Overview of UPPMAX systems

    • NAISS-SENS

    • Several clusters, like

      • Bianca
      • Rackham

    • Login and compute nodes

  • Legal and administrative aspects

    • Sensitive personal data
    • Pseudonymisation and anonymisation
    • Apply for project

  • Transferring files

    • The wharf works like a dock at the harbour.

    • There are several ways to use the wharf to transfer files

    • copy

    • transit server
    • rsync, scp/sftp

  • Introduction to compute nodes

    • Submitting jobs

      • Slurm, sbatch, the job queue
      • Jobs
      • Slurm parameters

      • Interactive jobs

        • allows you to work interactively with command line and your tools but on a compute node.

    • How compute nodes are moved between project clusters

    • Other Slurm tools

  • Software and package installation

    • Install software yourself

    • Packages and libraries to scripting programs

      • Conda
      • Python packages with pip
      • R packages
      • Julia packages

    • "Containers"

      • Singularity
      • Docker

    • Build from source

    • Summary about the Bianca Hardware

  • IDE:s on Bianca

    • RStudio

      • Run in interactive session

    • Jupyter

      • Run in interactive session

    • VSCodium

      • Run in interactive session