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Lesson plan

2025-09-11

Check my reflections and collect todo's:

  • [x] 'Prerequisites 5/5: (Basic course only) Have FileZilla installed': document this better: not everyone is allowed to install it

  • [->] Take into account that the to-do 'Discuss either moving SSH login to the Intermediate course, or request 45 minutes more time' failed

Below is the current schedule, let's see how far my progress is.

When Who What
9:00 R Introduction, login, log in to remote desktop
10:00 . Break
10:15 R use the remote desktop, Log in to console environment, command line
11:00 . Break
11:15 R Create an executable script, use modules
12:00 . Lunch
13:00 P Transferring files to and from Bianca using FileZilla
13:55 . Break
14:05 J Compute nodes and SLURM, including interactive nodes
14:55 . Break
15:10 B RStudio
15:45 R Summary and anonymous evaluation
16:00 . Done!
  • Who: B: Björn, J: Jayant, P: Pavlin, R: Richèl
  • 🚀: for those that are (even) faster
Session State
Prerequisites Done
Introduction Done
login Done
log in to remote desktop Done
use the remote desktop Done
Log in to console environment Done
command line Done
Create an executable script Done
use modules Done
Summary Done
anonymous evaluation Done
Evaluation Done
  • [x] Fix Mermaid at https://docs.uppmax.uu.se/getting_started/login_bianca_remote_desktop_website/
  • [x] Add Priors to Introduction
  • [x] Add Feedback to general login
  • [x] Add Feedback to login remote desktop
  • [x] Add Feedback to use remote desktop
  • [x] Add Feedback to login console
  • [x] Add Priors and Feedback to 'command line': no, this is optional
  • [x] Restructure 'command line': removed content
  • [x] Link 'command line' to NAISS Command Line 101 and 201
  • [x] Add Priors and Feedback to 'create an exe script'
  • [x] Re-do exercises 'Modules', check 'bioinfo-tools'
  • [x] Add Feedback 'Modules'
  • [x] Add link to NAISS File Transfer course to 'File transfer'
  • [x] Move 'Introduction to transfer' to extra material
  • [x] Move 'Introduction to compute nodes' to extra material
  • [x] Prepare anonymous feedback
  • [x] Tell why use Bianca in intro
  • [x] Improve titles of subsections
  • [x] Improve explanation on where to create a text file
  • [x] Prepare evaluations