UPPMAX Documentation
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UPPMAX Documentation
GitHub
Home
Getting Started
Getting Started
Get started
Applying for a Project
Accessing UPPMAX
Accessing UPPMAX
Get inside the university networks
Log in to Rackham
Log in to Bianca
Log in to Snowy
Log in to Dardel (at PDC)
Linux tutorials
Linux tutorials
Working in Linux
Basic Linux commands
Cluster user guide
Cluster user guide
The UPPMAX clusters
Clusters
Clusters
Rackham
Bianca
Snowy
Dardel (at PDC)
General cluster tools
General cluster tools
Start an interactive node
Modules
Slurm
Managing your project
Running jobs
Running jobs
Checking and optimizing jobs
Runtime tips
Storage and compression
Screen
Data transfer
Data transfer
Transfer to/from Rackham
Transfer to/from Bianca
Migrate to Dardel (at PDC)
Webexport
Software
Software
Overview
Software table
Text editors
Software-specific documentation
Software-specific documentation
Chemistry/physics/atmosphere
Chemistry/physics/atmosphere
GAMESS_US
Gaussian
GROMACS
Molcas
WRF
Integrated development environments (IDE)
Integrated development environments (IDE)
Jupyter
RStudio
VSCode
VSCodium
Life Science
Life Science
BEAST
BEAST2
Cram
IGV
MetONTIIME
Tracer
Machine Learning and AI
Machine Learning and AI
NVIDIA DLF
TensorFlow
Whisper
Programming languages
Programming languages
Julia
MATLAB
Python
Perl
R
Misc tools
Misc tools
Allinea DDT
darsync
jobstats
projplot
Rclone
SSH
SFTP
ThinLinc
Installing and development
Installing and development
Installing
Installing with conda
Compilers
Compiling serial code
Compiling parallel code
Debuggers
Nextflow & nf-core
Profilers
Singularity/Apptainer
Spack
Databases
Databases
Overview
BLAST databases available locally
NCBI taxonomy databases
DIAMOND protein alignment databases
Reference genomes
1000-genome project
Simons Genome Diversity Project datasets
Other bioinformatics-oriented local data resources
Support
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