| Alignment |
blast |
blast |
rackham bianca miarka snowy |
2.14.1+, 2.15.0+ |
Public Domain |
| Alignment |
bowtie2 |
bowtie2 |
rackham bianca miarka snowy |
2.5.2 |
GPL v3 |
| Alignment |
cactus |
cactus |
rackham bianca miarka snowy |
2.7.2, 2.8.2 |
Copyright |
| Alignment |
ClipKIT |
ClipKIT |
rackham bianca miarka snowy |
2.2.4 |
MIT |
| Alignment |
CrossMap |
CrossMap |
rackham bianca miarka snowy |
0.6.6 |
GPL v2+ |
| Alignment |
diamond |
diamond |
rackham bianca miarka snowy |
2.0.6, 2.1.9 |
GPL v3 |
| Alignment |
fasta |
fasta |
rackham bianca miarka snowy |
36.3.8i |
Apache 2.0 |
| Alignment |
hmmer |
hmmer |
rackham bianca miarka snowy |
3.4 |
custom open-source |
| Alignment |
last |
last |
rackham bianca miarka snowy |
1505 |
None |
| Alignment |
lastz |
lastz |
rackham bianca miarka snowy |
1.04.22 |
MIT |
| Alignment |
mapAD |
mapAD |
rackham bianca miarka snowy |
0.42.1 |
MIT |
| Alignment |
mapcaller |
mapcaller |
rackham bianca miarka snowy |
0.9.9.41 |
MIT |
| Alignment |
MashMap |
MashMap |
rackham bianca miarka snowy |
3.0.4 |
Mixed |
| Alignment |
minimap2 |
minimap2 |
rackham bianca miarka snowy |
2.26-r1175 |
MIT |
| Alignment |
miniprot |
miniprot |
rackham bianca miarka snowy |
0.12, 0.13 |
MIT |
| Alignment |
MMseqs2 |
MMseqs2 |
rackham bianca miarka snowy |
14-7e284, 15-6f452 |
GPL v3 |
| Alignment |
ngmlr |
ngmlr |
rackham bianca miarka snowy |
0.2.7-20210816-a2a31fb |
MIT |
| Alignment |
pbmm2 |
pbmm2 |
rackham bianca miarka snowy |
1.13.0 |
BSD 3 |
| Alignment |
randfold |
randfold |
rackham bianca miarka snowy |
2.0.1 |
None |
| Alignment |
RMBlast |
RMBlast |
rackham bianca miarka snowy |
2.2.28, 2.14.1+ |
Public domain |
| Alignment |
skani |
skani |
rackham bianca miarka snowy |
0.2.1 |
MIT |
| Alignment |
SNAP-aligner |
SNAP-aligner |
rackham bianca miarka snowy |
2.0.3 |
Apache 2.0 |
| Alignment |
spaln |
spaln |
rackham bianca miarka snowy |
3.0.3 |
GPL v2 and custom |
| Alignment |
star |
star |
rackham bianca miarka snowy |
2.7.8a, 2.7.11a |
MIT |
| Alignment |
trf |
trf |
rackham bianca miarka snowy |
4.10.0-rc.2 |
Gnu Afferoo GPL v3 |
| Alignment |
US-align |
US-align |
rackham bianca miarka snowy |
20230727-e5c6270 |
Custom open source AS-IS |
| Alignment |
wfmash |
wfmash |
rackham bianca miarka snowy |
0.12.5 |
MIT |
| Annotation |
af2complex |
af2complex |
rackham bianca miarka snowy |
1.4.0 |
None |
| Annotation |
alphapulldown |
alphapulldown |
rackham bianca miarka snowy |
1.0.4 |
GPL-3.0 |
| Annotation |
augustus |
augustus |
rackham bianca miarka snowy |
3.5.0, 3.5.0-20231223-33fc04d |
Artistic License 1.0 |
| Annotation |
bali-phy |
bali-phy |
rackham bianca miarka snowy |
4.0-beta15 |
None |
| Annotation |
bcftools-score |
bcftools-score |
rackham bianca miarka snowy |
1.18-20231207-9c8e21e |
MIT |
| Annotation |
braker |
braker |
rackham bianca miarka snowy |
3.0.3, 3.0.7, 3.0.8 |
Artistic 1.0 |
| Annotation |
colabfold-local |
colabfold-local |
rackham bianca miarka snowy |
1.5.5 |
MIT |
| Annotation |
compleasm |
compleasm |
rackham bianca miarka snowy |
0.2.2, 0.2.5, 0.2.6 |
Apache 2.0 and others |
| Annotation |
CookHLA |
CookHLA |
rackham irma bianca miarka snowy |
1.0.0 |
None |
| Annotation |
DeepLoc |
DeepLoc |
rackham bianca miarka snowy |
2.0 |
None |
| Annotation |
dorado |
dorado |
rackham bianca miarka snowy |
0.6.1, 0.8.2 |
PLC 1.0 |
| Annotation |
duplex-tools |
duplex-tools |
rackham bianca miarka snowy |
0.3.3 |
MPL 2.0 |
| Annotation |
funannotate |
funannotate |
rackham bianca miarka snowy |
1.8.1, 1.8.17 |
BSD-2 |
| Annotation |
GeneMark |
GeneMark |
rackham bianca miarka snowy |
4.69-es, 4.71-es, 4.72-es |
Custom |
| Annotation |
GeneMark-ETP |
GeneMark-ETP |
rackham bianca miarka snowy |
1.02-20231213-dd8b37b |
Creative Commons Attribution NonCommercial ShareAlike 4.0 License |
| Annotation |
GenomeThreader |
GenomeThreader |
rackham bianca miarka snowy |
1.7.4 |
Custom AS IS |
| Annotation |
HATCHet |
HATCHet |
rackham bianca miarka snowy |
2.0.1 |
BSD-3 |
| Annotation |
HATK |
HATK |
rackham bianca miarka snowy |
2.0beta |
AS IS |
| Annotation |
hybpiper |
hybpiper |
rackham bianca miarka snowy |
2.1.6 |
GPLv3 |
| Annotation |
igv-reports |
igv-reports |
rackham bianca miarka snowy |
1.12.0-python3.9.5 |
MIT |
| Annotation |
InterProScan |
None |
None |
5.65-97.0, 5.67-99.0, .z |
None |
| Annotation |
IsoQuant |
IsoQuant |
rackham bianca miarka snowy |
3.3.1 |
Custom |
| Annotation |
jcvi |
jcvi |
rackham bianca miarka snowy |
1.3.8 |
BSD2 |
| Annotation |
kmersGWAS |
kmersGWAS |
rackham irma bianca miarka snowy |
20221010-a706bb7 |
None |
| Annotation |
LDAK |
LDAK |
rackham bianca miarka snowy |
5.2 |
Open source AS IS |
| Annotation |
LOHHLA |
LOHHLA |
rackham bianca miarka snowy |
20210129-00744c5 |
None |
| Annotation |
LOHHLA-slagtermaarten |
LOHHLA-slagtermaarten |
rackham bianca miarka snowy |
20200219-b38c477 |
None |
| Annotation |
macse |
macse |
rackham bianca miarka snowy |
2.07 |
None |
| Annotation |
MakeHub |
MakeHub |
rackham bianca miarka snowy |
1.0.5-20200210-1ecd6bb, 1.0.8-20240217-31cc299 |
GPL v3 |
| Annotation |
metaeuk |
metaeuk |
rackham bianca miarka snowy |
6-a5d39d9 |
GPL v3 |
| Annotation |
OBITools |
OBITools |
rackham bianca miarka snowy |
1.2.13 |
CeCILL |
| Annotation |
OBITools3 |
OBITools3 |
rackham bianca miarka snowy |
3.0.1b24 |
CeCILL |
| Annotation |
omm-macse |
omm-macse |
rackham bianca miarka snowy |
12.01 |
None |
| Annotation |
ORFfinder |
ORFfinder |
rackham irma bianca miarka snowy |
0.4.3 |
Public domain |
| Annotation |
OrthoFinder |
OrthoFinder |
rackham bianca miarka snowy |
2.5.2, 2.5.5 |
GPL v3 |
| Annotation |
polysolver |
polysolver |
rackham bianca miarka snowy |
v4 |
None |
| Annotation |
ProtHint |
ProtHint |
rackham bianca miarka snowy |
2.6.0-20231027-103304c |
GeneMark license |
| Annotation |
pullseq |
pullseq |
rackham bianca miarka snowy |
20230518-7381691 |
None |
| Annotation |
pVACtools |
pVACtools |
rackham bianca miarka snowy |
3.1.1 |
BSD3 |
| Annotation |
pycoQC |
pycoQC |
rackham bianca miarka snowy |
2.5.2 |
GPL-3.0 |
| Annotation |
RepeatMasker |
RepeatMasker |
rackham bianca miarka snowy |
4.1.5 |
None |
| Annotation |
sepp |
sepp |
rackham bianca miarka snowy |
4.3.10_python_3.7.2, 4.5.1, 4.5.2 |
GPL v3 |
| Annotation |
sequenza-utils |
sequenza-utils |
rackham bianca miarka snowy |
3.0.0 |
None |
| Annotation |
SignalP |
SignalP |
rackham bianca miarka snowy |
6.0h |
None |
| Annotation |
snpEff |
snpEff |
rackham bianca miarka snowy |
5.2 |
MIT |
| Annotation |
soprano |
soprano |
rackham bianca miarka snowy |
20240418-938604e |
GPL-3.0 |
| Annotation |
svtools |
svtools |
rackham bianca miarka snowy |
0.5.1 |
MIT |
| Annotation |
tabixpp |
tabixpp |
rackham bianca miarka snowy |
1.1.2 |
MIT |
| Annotation |
TEspeX |
TEspeX |
rackham bianca miarka snowy |
2.0.1 |
GPL v3 |
| Annotation |
TransDecoder |
TransDecoder |
rackham bianca miarka snowy |
5.7.1-20230913-8b926ac |
None |
| Annotation |
TrEMOLO |
TrEMOLO |
rackham bianca miarka snowy |
2.2-beta1 |
GPL v3 |
| Annotation |
trex |
trex |
rackham bianca miarka snowy |
20230904-df86afe, 20231120-d9c840a |
None |
| Annotation |
TSEBRA |
TSEBRA |
rackham bianca miarka snowy |
1.1.2.4 |
Artistic License 2.0 |
| Annotation |
vartrix |
vartrix |
rackham bianca miarka snowy |
1.1.22 |
MIT |
| Annotation |
vcf2maf |
vcf2maf |
rackham bianca miarka snowy |
1.6.21 |
Apache 2.0 |
| Annotation |
WhatsHap |
WhatsHap |
rackham bianca miarka snowy |
2.3-20240529-be88057 |
MIT |
| Assembly |
assembly-stats |
assembly-stats |
rackham bianca miarka snowy |
1.0.1-20211102-c006b9c |
GPL v3 |
| Assembly |
Flye |
Flye |
rackham bianca miarka snowy |
2.9.5 |
BSD-3-Clause |
| Assembly |
GetOrganelle |
GetOrganelle |
rackham bianca miarka snowy |
1.7.3.3, 1.7.7.0 |
GPLv3 |
| Assembly |
hifiasm |
hifiasm |
rackham bianca miarka snowy |
0.16.1-r375, 0.19.8-r603, 0.20.0-r639 |
MIT |
| Assembly |
hifiasm-meta |
hifiasm-meta |
rackham bianca miarka snowy |
0.3.2-r74 |
MIT |
| Assembly |
IPA |
IPA |
rackham irma bianca miarka snowy |
1.8.0 |
BSD 3-clause |
| Assembly |
L_RNA_scaffolder |
L_RNA_scaffolder |
rackham bianca miarka snowy |
20190530-98f19e3 |
None |
| Assembly |
MBG |
MBG |
rackham bianca miarka snowy |
1.0.14 |
MIT |
| Assembly |
metaMDBG |
metaMDBG |
rackham bianca miarka snowy |
0.3-20240117-57f4493 |
MIT |
| Assembly |
miniasm |
miniasm |
rackham bianca miarka snowy |
0.3-r179-20191007-ce615d1 |
MIT |
| Assembly |
Polypolish |
Polypolish |
rackham bianca miarka snowy |
5.0 |
GPL-3.0 |
| Assembly |
purge_dups |
purge_dups |
rackham bianca miarka snowy |
1.2.5, 1.2.6 |
MIT |
| Assembly |
Redundans |
Redundans |
rackham bianca miarka snowy |
2.0.1 |
GPL v3 |
| Assembly |
shovill |
shovill |
rackham bianca miarka snowy |
1.0.0, 1.1.0 |
GPL-3.0 |
| Assembly |
SKESA |
SKESA |
rackham bianca miarka snowy |
2.4.0 |
Public domain |
| Assembly |
spades |
spades |
rackham bianca miarka snowy |
4.0.0 |
GPL v2 |
| Assembly |
StringTie |
StringTie |
rackham bianca miarka snowy |
2.2.1 |
MIT |
| Assembly |
Trycycler |
Trycycler |
rackham bianca miarka snowy |
0.5.4 |
GPL-3.0 |
| Assembly |
vg |
vg |
rackham bianca miarka snowy |
1.29.0, 1.48.0 |
mixed |
| Bioinformatics alignment |
AGE |
AGE |
bianca irma milou rackham snowy |
0.4 |
None |
| Bioinformatics alignment |
GEM-Tools |
GEM-Tools |
rackham irma bianca snowy |
1.7.1 |
None |
| Bioinformatics alignment |
HISAT2 |
HISAT2 |
bianca irma rackham snowy |
2.0.1-beta, 2.0.5, 2.1.0, 2.2.1 |
GPL v3 |
| Bioinformatics alignment |
infernal |
infernal |
bianca miarka milou rackham snowy |
1.0.2, 1.1.1, 1.1.2 |
BSD |
| Bioinformatics alignment |
Kalign |
Kalign |
rackham irma bianca snowy |
1.04, 2.04 |
None |
| Bioinformatics alignment |
LEON-BIS |
LEON-BIS |
bianca irma milou rackham snowy |
20130322 |
None |
| Bioinformatics alignment |
MafFilter |
MafFilter |
bianca irma milou rackham snowy |
1.1.2 |
None |
| Bioinformatics alignment |
MAFFT |
MAFFT |
bianca irma rackham snowy |
7.205, 7.245, 7.310, 7.407 |
BSD (main), mixed open-source (extensions) |
| Bioinformatics alignment |
MUMmer |
MUMmer |
rackham irma bianca snowy |
3.9.4alpha, 3.22, 3.23, 4.0.0beta2, 4.0.0rc1 |
Artistic License 2.0 |
| Bioinformatics alignment |
unimap |
unimap |
rackham irma bianca snowy |
0.1-r46-dirty |
MIT |
| Bioinformatics annotation |
AAT |
AAT |
bianca irma milou rackham snowy |
r03052011 |
Custom "AS IS" |
| Bioinformatics annotation |
GEMINI |
None |
None |
0.16.3, 0.18.3, 0.19.0, 0.20.0, 0.20.1, .gemini_0.18.3 |
None |
| Bioinformatics annotation |
HaMStR |
None |
None |
13.2.3, .HaMStR, .HaMStR-old |
None |
| Bioinformatics annotation |
InterProScan |
InterProScan |
bianca miarka rackham snowy |
5.52-86.0 |
Misc |
| Bioinformatics annotation |
libBigWig |
libBigWig |
rackham irma bianca snowy |
0.4.4 |
MIT |
| Bioinformatics annotation |
ProtHint |
ProtHint |
rackham miarka bianca snowy |
2.4.0 |
GeneMark license https://github.com/gatech-genemark/ProtHint/blob/master/LICENSE |
| Bioinformatics annotation |
tmhmm |
tmhmm |
rackham miarka bianca snowy |
2.0c |
Custom as-is |
| Bioinformatics annotation |
VIBRANT |
VIBRANT |
rackham irma bianca snowy |
1.2.1 |
GNU General Public License |
| Bioinformatics assembly |
A5-miseq |
None |
None |
20140113, 20140604, 20160825, .A5-miseq |
None |
| Bioinformatics assembly |
abyss |
abyss |
bianca irma milou rackham snowy |
1.3.5, 1.3.5-max, 1.3.7, 1.3.7-k128, 1.3.7-max, 1.5.2, 1.9.0, 1.9.0-k128, 2.0.2, 2.0.2-k128 |
GPL v3 |
| Bioinformatics assembly |
allpathslg |
None |
bianca irma rackham snowy |
47300, 49618, 52485, 52488 |
None |
| Bioinformatics assembly |
AMOS |
AMOS |
bianca irma milou rackham snowy |
3.0.0, 3.1.0 |
Artistic |
| Bioinformatics assembly |
ARC_assembler |
ARC_assembler |
milou |
1.1.3 |
Apache 2.0 |
| Bioinformatics assembly |
ARCS |
ARCS |
rackham irma bianca snowy |
1.0.6, 1.1.1 |
GPL v3 |
| Bioinformatics assembly |
BESST |
None |
None |
1.0.4.3, 1.0.4.4, .besst |
None |
| Bioinformatics assembly |
DBG2OLC |
DBG2OLC |
rackham snowy miarka bianca |
20151208 |
None |
| Bioinformatics assembly |
DISCOVARdenovo |
None |
bianca miarka rackham snowy |
51885, 52488 |
None |
| Bioinformatics assembly |
FALCON |
FALCON |
rackham miarka bianca snowy |
0.3.0, 0.4.1, 2018.31.08-03.06 |
Clear BSD |
| Bioinformatics assembly |
FALCON-integrate |
FALCON-integrate |
bianca miarka milou rackham snowy |
20161113 |
Custom "as is" |
| Bioinformatics assembly |
Flye |
Flye |
rackham miarka bianca snowy |
2.3.5, 2.4.2, 2.8.1 |
-d |
| Bioinformatics assembly |
GAA |
GAA |
rackham miarka bianca snowy |
1.1 |
GPL v2+ |
| Bioinformatics assembly |
GARM |
GARM |
bianca irma milou rackham snowy |
0.7, 0.7.3 |
None |
| Bioinformatics assembly |
IDBA |
None |
bianca miarka rackham snowy |
1.1.1, 1.1.1-384, 1.1.3 |
None |
| Bioinformatics assembly |
LINKS |
LINKS |
rackham miarka bianca snowy |
1.8.7 |
GPL v3 |
| Bioinformatics assembly |
MaSuRCA |
MaSuRCA |
rackham miarka bianca snowy |
2.0.3.1, 2.1.0, 2.2.1, 2.3.2, 3.1.3, 3.2.1, 3.2.2, 3.2.3, 3.3.5, 3.4.2 |
GPL v3 |
| Bioinformatics assembly |
MetAMOS |
MetAMOS |
bianca irma milou rackham snowy |
1.5rc3 |
GPLv2 and other open source |
| Bioinformatics assembly |
Metassembler |
Metassembler |
milou |
1.5 |
open-source |
| Bioinformatics assembly |
MHAP |
MHAP |
milou |
1.6 |
Apache 2.0 |
| Bioinformatics assembly |
Platanus-allee |
Platanus-allee |
bianca irma rackham snowy |
2.0.2 |
GPL v3 |
| Bioinformatics assembly |
quickmerge |
quickmerge |
rackham irma bianca snowy |
0.3-9233726 |
GPL v3 |
| Bioinformatics assembly |
Unicycler |
Unicycler |
bianca irma rackham snowy |
0.4.8 |
GPL v3 |
| Bioinformatics assembly |
wtdbg2 |
wtdbg2 |
rackham irma bianca snowy |
2.4 |
GPL v3 |
| Bioinformatics misc |
AdapterRemoval |
AdapterRemoval |
bianca irma milou rackham snowy |
2.1.7, 2.2.2 |
GPL v3 |
| Bioinformatics misc |
AdmixTools |
AdmixTools |
bianca irma milou rackham snowy |
5.0-20170312, 5.0-20171024, 7.0.1, 20160803 |
Custom "as-is" open source |
| Bioinformatics misc |
ADMIXTURE |
ADMIXTURE |
bianca irma milou rackham snowy |
1.3.0 |
Not open source |
| Bioinformatics misc |
AlienTrimmer |
AlienTrimmer |
bianca irma milou rackham snowy |
0.4.0 |
GPL |
| Bioinformatics misc |
ANGSD |
ANGSD |
rackham irma bianca snowy |
0.917, 0.917-g6522d3e, 0.921, 0.933 |
None |
| Bioinformatics misc |
Athlates |
Athlates |
bianca irma milou rackham snowy |
20140426 |
Custom |
| Bioinformatics misc |
ATLAS_aDNA |
ATLAS_aDNA |
bianca irma milou rackham snowy |
20170510 |
None |
| Bioinformatics misc |
ATSAS |
ATSAS |
bianca irma milou rackham snowy |
2.8.3-1 |
Academic use only |
| Bioinformatics misc |
bam2fastx |
bam2fastx |
rackham irma bianca snowy |
1.3.0-80dbf79 |
BSD 3-clause |
| Bioinformatics misc |
bambam |
bambam |
bianca irma rackham snowy |
1.4 |
MIT |
| Bioinformatics misc |
Bamsurgeon |
Bamsurgeon |
rackham irma bianca snowy |
1.3 |
MIT License |
| Bioinformatics misc |
bcftools |
bcftools |
bianca irma rackham snowy |
1.8, 1.10 |
"MIT/Expat or GPL v3" |
| Bioinformatics misc |
BEETL |
BEETL |
bianca irma milou rackham snowy |
1.0.2, 1.1.0 |
BSD 2-Clause |
| Bioinformatics misc |
bgen |
bgen |
rackham irma bianca snowy |
1.1.4 |
Boost Software License v1.0 |
| Bioinformatics misc |
BioPerl |
BioPerl |
bianca miarka rackham snowy |
1.6.924_Perl5.18.4, 1.7.1_Perl5.24.1, 1.7.2_Perl5.24.1, 1.7.2_Perl5.26.2 |
Perl |
| Bioinformatics misc |
bonito |
None |
rackham irma bianca snowy |
0.3.7-cpu, 0.3.8, 0.4.0 |
Oxford Nanopore Public License 1.0 |
| Bioinformatics misc |
BraCeR |
BraCeR |
rackham irma bianca snowy |
2019_10_03_22e49cb |
Apache 2.0 |
| Bioinformatics misc |
cdbfasta |
cdbfasta |
bianca irma rackham snowy |
1.00 |
"Artistic 2.0" |
| Bioinformatics misc |
cellranger-ATAC |
None |
bianca irma rackham snowy |
1.2.0, 2.0.0 |
None |
| Bioinformatics misc |
CheckM |
CheckM |
bianca irma rackham snowy |
1.0.11, 1.0.12, 1.1.3 |
""""""""""""GPL v3"""""""""""" |
| Bioinformatics misc |
CITE-seq-Count |
CITE-seq-Count |
rackham irma bianca snowy |
1.4.3 |
MIT |
| Bioinformatics misc |
CleaveLand4 |
CleaveLand4 |
bianca irma milou rackham snowy |
4.3 |
GPL v3 |
| Bioinformatics misc |
CNV-seq |
CNV-seq |
milou |
20140812 |
Misc open source |
| Bioinformatics misc |
CNVnator |
CNVnator |
bianca irma milou rackham snowy |
0.3.2, 0.3.3 |
Creative Commons Public License |
| Bioinformatics misc |
CONCOCT |
CONCOCT |
rackham irma bianca snowy |
0.4.0, 0.4.0~, 0.5.0, 1.1.0 |
FreeBSD |
| Bioinformatics misc |
Corset |
Corset |
bianca irma milou rackham snowy |
1.04, 1.07 |
GPL v3 |
| Bioinformatics misc |
DATES |
DATES |
rackham irma bianca snowy |
753 |
None |
| Bioinformatics misc |
DosageConvertor |
DosageConvertor |
rackham irma bianca snowy |
1.0.4 |
custom |
| Bioinformatics misc |
DWGSIM |
DWGSIM |
bianca irma milou rackham snowy |
0.1.11-6e9a361 |
GPL v2 |
| Bioinformatics misc |
EnsEMBL-API |
EnsEMBL-API |
rackham irma bianca snowy |
87, 94 |
Apache License 2.0 |
| Bioinformatics misc |
EPACTS |
EPACTS |
bianca miarka milou rackham snowy |
3.2.6, 3.2.6_milou, 3.3.0-a5209db |
GPL v3 |
| Bioinformatics misc |
ExpansionHunter |
None |
bianca irma rackham snowy |
2.5.3, 2.5.5 |
None |
| Bioinformatics misc |
FastANI |
FastANI |
rackham irma bianca snowy |
1.2 |
Apache 2.0 |
| Bioinformatics misc |
fastp |
fastp |
rackham irma bianca snowy |
0.20.0, 0.23.1 |
MIT |
| Bioinformatics misc |
fcGENE |
fcGENE |
rackham irma bianca snowy |
1.0.7 |
GPL |
| Bioinformatics misc |
Filtlong |
Filtlong |
rackham irma bianca snowy |
0.2.0 |
GPL v3 |
| Bioinformatics misc |
FLASH |
FLASH |
bianca irma milou rackham snowy |
1.2.11 |
GPL |
| Bioinformatics misc |
FusionCatcher |
None |
rackham irma bianca snowy |
1.00, 1.10, 1.33 |
GPLv3 |
| Bioinformatics misc |
GEM |
GEM |
bianca irma rackham snowy |
2.7, 3.4 |
"""""""""""Research only""""""""""" |
| Bioinformatics misc |
GEMMA |
GEMMA |
rackham irma bianca snowy |
0.98.1 |
GPL3 |
| Bioinformatics misc |
GeneMark |
GeneMark |
rackham miarka bianca snowy |
2.3-es, 4.32-es, 4.33-es, 4.33-es_Perl5.24.1, 4.38-es, 4.57-es, 4.62-es, 4.68-es |
Custom |
| Bioinformatics misc |
Genepop |
Genepop |
rackham irma bianca snowy |
4.7 |
CeCILL (GPL compatible) |
| Bioinformatics misc |
GenomeTools |
GenomeTools |
rackham irma bianca snowy |
1.5.8, 1.5.9, 1.6.1 |
ISC |
| Bioinformatics misc |
GERP++ |
GERP++ |
bianca irma milou rackham snowy |
20110522 |
GPL v3+ |
| Bioinformatics misc |
GTOOL |
GTOOL |
milou |
0.7.5 |
"""""""""""As is" open source"""""""""" |
| Bioinformatics misc |
HiCUP |
HiCUP |
rackham irma bianca snowy |
0.7.2 |
GPL v3 or later |
| Bioinformatics misc |
htslib |
htslib |
bianca irma rackham snowy |
1.8, 1.10 |
"MIT/Expat and modified 3-clause BSD" |
| Bioinformatics misc |
IGV |
None |
bianca irma rackham snowy |
2.3.17, 2.3.40, 2.3.92, 2.4.2, 2.8.13 |
None |
| Bioinformatics misc |
IGVtools |
IGVtools |
bianca irma milou rackham snowy |
2.3.17, 2.3.40, 2.3.91, 2.3.98 |
LGPL |
| Bioinformatics misc |
IM |
IM |
bianca irma milou rackham snowy |
20091217 |
None |
| Bioinformatics misc |
IMa2p |
IMa2p |
milou |
2015-08-09 |
GPL v3 |
| Bioinformatics misc |
IMPUTE2 |
IMPUTE2 |
bianca irma milou rackham snowy |
2.3.2 |
"""""""""""As is" open source"""""""""" |
| Bioinformatics misc |
ITSx |
None |
None |
1.0.9, 1.0.11, 1.1-beta, .itsx |
None |
| Bioinformatics misc |
KAT |
KAT |
bianca irma rackham snowy |
2.0.4, 2.0.6, 2.0.8, 2.1.1, 2.3.4, 2.4.2, 2.4.2_py3.5.0, 2.4.2_py3.7.2 |
GPL v3 |
| Bioinformatics misc |
KmerGenie |
None |
None |
1.6741, 1.7039, .kmergenie |
None |
| Bioinformatics misc |
Kraken |
None |
rackham irma bianca miarka snowy |
0.10.5-beta, 1.0, 1.1-352e780, 1.1.1, 1.1.1-20210927-375654f |
GPL v3 |
| Bioinformatics misc |
Kraken2 |
Kraken2 |
bianca irma rackham snowy |
2.0.8-beta |
MIT |
| Bioinformatics misc |
Krona |
Krona |
bianca miarka milou rackham snowy |
2.7 |
Custom open source |
| Bioinformatics misc |
LASER |
LASER |
bianca irma rackham snowy |
2.01, 2.02, 2.04 |
GPL v3 |
| Bioinformatics misc |
LatentStrainAnalysis |
LatentStrainAnalysis |
milou |
20160322 |
MIT |
| Bioinformatics misc |
LDhelmet |
LDhelmet |
bianca irma rackham snowy |
1.7, 1.9, 1.10 |
GPL v3 |
| Bioinformatics misc |
LTR_Finder |
LTR_Finder |
bianca irma rackham snowy |
1.0.5, 1.0.7 |
Free for non-commercial use |
| Bioinformatics misc |
LUMPY |
LUMPY |
rackham irma bianca snowy |
0.2.12, 0.2.13, 0.2.13-97cf18c, 0.2.13-213a417, 0.3.0 |
MIT |
| Bioinformatics misc |
MACE |
MACE |
milou |
1.2 |
None |
| Bioinformatics misc |
MACS |
MACS |
bianca miarka rackham snowy |
2.1.0, 2.1.2, 2.2.6, 3.0.0a6 |
"""""BSD 3-clause""""" |
| Bioinformatics misc |
MAGeCK |
MAGeCK |
rackham irma bianca snowy |
0.5.6, 0.5.9.4 |
BSD 3-clause |
| Bioinformatics misc |
medaka |
medaka |
rackham irma bianca snowy |
0.7.1 |
MPL 2.0 |
| Bioinformatics misc |
Meerkat |
Meerkat |
milou |
0.189 |
Misc non-commercial open source |
| Bioinformatics misc |
MetaBat |
MetaBat |
bianca irma milou rackham snowy |
0.26.3, 2.12.1 |
BSD-like |
| Bioinformatics misc |
METAL |
METAL |
rackham miarka bianca snowy |
2011-03-25 |
open source |
| Bioinformatics misc |
MetaSV |
MetaSV |
bianca irma milou rackham snowy |
0.5.4 |
BSD 2-clause |
| Bioinformatics misc |
Metaxa2 |
Metaxa2 |
rackham irma bianca snowy |
2.1.3, 2.2 |
GPL v3 |
| Bioinformatics misc |
MethPipe |
MethPipe |
rackham irma bianca snowy |
3.4.3, 4.1.1 |
GPL v3+ |
| Bioinformatics misc |
MethylDackel |
MethylDackel |
rackham irma bianca snowy |
0.2.1, 0.5.1 |
MIT |
| Bioinformatics misc |
Mothur |
Mothur |
bianca miarka rackham snowy |
1.40.5, 1.41.0 |
GPL v3 |
| Bioinformatics misc |
ms |
ms |
rackham irma bianca snowy |
20071014 |
open source |
| Bioinformatics misc |
MultiQC |
MultiQC |
bianca irma rackham snowy |
0.6, 0.7, 0.8, 1.8, 1.9, 1.10 |
MIT |
| Bioinformatics misc |
NanoComp |
NanoComp |
bianca irma rackham snowy |
1.9.2 |
GPL v3 |
| Bioinformatics misc |
NanoPlot |
NanoPlot |
rackham irma bianca snowy |
1.33.1 |
GPL3 license |
| Bioinformatics misc |
NPStat |
NPStat |
rackham irma bianca snowy |
1 |
GPL v3 license |
| Bioinformatics misc |
nseg |
nseg |
rackham irma bianca snowy |
1.0.1 |
Public Domain |
| Bioinformatics misc |
ont_fast5_api |
ont_fast5_api |
rackham irma bianca snowy |
3.1.6 |
Mozilla Public License 2.0 |
| Bioinformatics misc |
PCAngsd |
PCAngsd |
bianca miarka rackham snowy |
0.982 |
""""""GPL v3"""""" |
| Bioinformatics misc |
PennCNV |
PennCNV |
milou |
20151014 |
Public domain |
| Bioinformatics misc |
phantompeakqualtools |
phantompeakqualtools |
bianca miarka milou rackham snowy |
1.1 |
MIT |
| Bioinformatics misc |
phaser |
phaser |
rackham irma bianca snowy |
20210423-5d4926d |
GNU |
| Bioinformatics misc |
piper |
piper |
bianca miarka rackham snowy |
1.5.1 |
MIT |
| Bioinformatics misc |
pizzly |
pizzly |
rackham irma bianca snowy |
0.37.3 |
BSD 2-clause |
| Bioinformatics misc |
plink2 |
plink2 |
rackham irma bianca snowy |
2.00-alpha-2-20180704, 2.00-alpha-2-20190429, 2.00-alpha-2.3-20200124 |
GPL v3 |
| Bioinformatics misc |
Porechop |
Porechop |
rackham irma bianca snowy |
0.2.4 |
GPL v3 |
| Bioinformatics misc |
prodigal |
prodigal |
bianca irma milou rackham snowy |
2.6.3 |
GPL v3 |
| Bioinformatics misc |
PRSice |
PRSice |
rackham irma bianca snowy |
2.2.11.b |
GPL3 |
| Bioinformatics misc |
psmc |
psmc |
rackham irma bianca snowy |
0.6.5-r67-e5f7df5 |
MIT |
| Bioinformatics misc |
RECON |
RECON |
rackham irma bianca snowy |
1.08 |
GPL |
| Bioinformatics misc |
RegScan |
RegScan |
rackham irma bianca snowy |
0.5 |
None |
| Bioinformatics misc |
RepeatScout |
RepeatScout |
rackham irma bianca snowy |
1.0.5, 1.0.6 |
open source |
| Bioinformatics misc |
schmutzi |
schmutzi |
rackham irma bianca snowy |
20160424, 20200706-597c6bc |
GPL v3 |
| Bioinformatics misc |
SeqAn |
None |
bianca irma rackham snowy |
1.4.2, 2.4.0 |
None |
| Bioinformatics misc |
SeqKit |
SeqKit |
rackham irma bianca snowy |
0.15.0 |
MIT license |
| Bioinformatics misc |
seqmonk |
seqmonk |
bianca irma milou rackham snowy |
0.21.0, 0.27.0, 0.32.1, 0.34.1, 1.36.0, 1.37.1 |
GPL |
| Bioinformatics misc |
SMC++ |
SMC++ |
rackham irma bianca snowy |
1.15.2 |
GPL v3 |
| Bioinformatics misc |
snippy |
snippy |
rackham miarka bianca snowy |
4.0, 4.0.5, 4.6.0 |
GPL v2 license |
| Bioinformatics misc |
spaceranger |
spaceranger |
bianca irma rackham snowy |
1.0.0, 1.2.0 |
other |
| Bioinformatics misc |
SweeD |
SweeD |
rackham irma bianca snowy |
4.0.0 |
GPL v3 license |
| Bioinformatics misc |
tabix |
tabix |
bianca miarka rackham snowy |
0.2.6 |
MIT/Expat and modified 3-clause BSD |
| Bioinformatics misc |
Tombo |
Tombo |
rackham irma bianca snowy |
1.5.1 |
Mozilla Public License 2.0 |
| Bioinformatics misc |
vawk |
vawk |
rackham irma bianca snowy |
0.0.1 |
None |
| Bioinformatics misc |
velocyto |
velocyto |
rackham irma bianca snowy |
0.17.17 |
BSD 2-clause |
| Bioinformatics phylogeny |
CONSEL |
CONSEL |
bianca irma milou rackham snowy |
0.20 |
None |
| Bioinformatics phylogeny |
ExaBayes |
ExaBayes |
bianca irma rackham snowy |
1.5, 1.5-mpi |
GPL v3 |
| Bioinformatics phylogeny |
FastML |
FastML |
bianca irma rackham snowy |
3.1, 3.11 |
""""""""""""GPL v2+"""""""""""" |
| Bioinformatics phylogeny |
FastTree |
FastTree |
bianca irma milou rackham snowy |
2.1.8, 2.1.10 |
Open source "as is" |
| Bioinformatics phylogeny |
HyPhy |
HyPhy |
rackham irma bianca snowy |
2.5.0, 2.5.0-mpi |
Custom open-source "as is" |
| Bioinformatics phylogeny |
MEGAN |
None |
None |
4.70.4, 5.1.5, 5.11.3, 6.3.5, 6.10.5, 6.20.17, .MEGAN |
None |
| Bioinformatics phylogeny |
raxml |
None |
None |
7.0.4, 7.2.7, 7.2.8, 7.3.0, 7.4.7, 8.0.20, 8.0.20-mpi, 8.2.0-gcc, 8.2.0-gcc-mpi, 8.2.0-icc, 8.2.0-icc-mpi, 8.2.0_gcc, 8.2.0_icc, 8.2.4-gcc, 8.2.4-gcc-mpi, 8.2.10-gcc, 8.2.10-gcc-mpi, 8.2.12-gcc, 8.2.12-gcc-mpi, .raxml |
None |
| Bioinformatics phylogeny |
RAxML-NG |
RAxML-NG |
bianca irma rackham snowy |
0.9.0-mpi |
GNU Affero GPL v3.0 |
| Bioinformatics pipelines |
fermikit |
fermikit |
bianca irma milou rackham snowy |
0.14-prerelease-96f7820, r178 |
None |
| Bioinformatics pipelines |
nf-core |
nf-core |
rackham irma bianca snowy |
1.12.1, 1.14, 2.1 |
MIT License |
| Bioinformatics pipelines |
nf-core-pipelines |
nf-core-pipelines |
rackham irma bianca snowy |
latest |
MIT License |
| Bioinformatics sw collections |
454-dataanalysis |
454-dataanalysis |
bianca irma milou rackham snowy |
2.3, 2.5.3, 2.6, 2.9 |
None |
| Bioinformatics sw collections |
454-dataprocessing |
454-dataprocessing |
bianca irma milou rackham snowy |
2.3 |
None |
| Bioinformatics sw collections |
ART |
ART |
rackham irma bianca snowy |
2016-06-05 |
None |
| Bioinformatics sw collections |
BEDOPS |
BEDOPS |
rackham irma bianca snowy |
2.4.3, 2.4.28, 2.4.39 |
GPL v2 |
| Bioinformatics sw collections |
BEDTools |
BEDTools |
rackham irma bianca snowy |
2.21.0, 2.23.0, 2.25.0, 2.26.0, 2.27.1, 2.29.2 |
MIT |
| Bioinformatics sw collections |
BioScope |
BioScope |
bianca irma rackham snowy |
1.3.1 |
Commercial |
| Bioinformatics sw collections |
CASAVA |
CASAVA |
bianca miarka milou rackham snowy |
1.7.0, 1.8.2 |
None |
| Bioinformatics sw collections |
cellranger |
None |
bianca irma rackham snowy |
1.1.0, 1.3.0, 2.0.2, 2.2.0, 3.0.1, 4.0.0, 5.0.1, 6.0.2 |
None |
| Bioinformatics sw collections |
cellranger-ARC |
cellranger-ARC |
bianca irma rackham snowy |
1.0.0 |
other |
| Bioinformatics sw collections |
cellranger-DNA |
cellranger-DNA |
bianca irma rackham snowy |
1.1.0 |
other |
| Bioinformatics sw collections |
GATK |
GATK |
bianca irma milou rackham snowy |
3.5.0, 3.6, 3.7, 3.8-0, 4.1.0.0, 4.1.1.0, 4.beta.5, build-20160727 |
BSD Style |
| Bioinformatics sw collections |
GATK-Queue |
GATK-Queue |
bianca irma milou rackham snowy |
3.2.2, 3.6, 3.7, 3.8-0 |
MIT + academic non-commercial |
| Bioinformatics sw collections |
GenomeSTRiP |
GenomeSTRiP |
bianca irma milou rackham snowy |
2.00.1650, 2.00.1685, 2.00.1710 |
Custom "as is" redistributable |
| Bioinformatics sw collections |
HiSeq |
HiSeq |
bianca irma milou rackham snowy |
0.9 |
None |
| Bioinformatics sw collections |
longranger |
longranger |
bianca irma rackham snowy |
2.0.1, 2.1.1, 2.1.2, 2.1.4, 2.2.2 |
other |
| Bioinformatics sw collections |
MEMEsuite |
MEMEsuite |
bianca irma rackham snowy |
5.0.1 |
BSD Style |
| Bioinformatics sw collections |
supernova |
None |
bianca irma rackham snowy |
1.0.0, 1.1.1, 1.1.4, 2.0.0, 2.1.1 |
None |
| Chemistry/physics |
ABINIT |
ABINIT |
bianca irma rackham snowy |
8.10.3 |
GPL v3 |
| Chemistry/physics |
ALPS |
ALPS |
rackham irma bianca snowy |
2.3.0 |
ALPS Library License version 1.0, ALPS Application License version 1.0 |
| Chemistry/physics |
DOCK |
DOCK |
bianca irma milou rackham |
3.7 |
Free Academic License |
| Chemistry/physics |
gromacs |
None |
None |
4.5.5, 4.5.5_intel, 4.5.7.th, 4.6.3, 4.6.3_rackham, 4.6.5, 4.6.5.th, 4.6.5_rackham, 4.6.7.th, 4.6.7.th.dp, 5.0.4, 5.0.4_rackham, 5.0.7, 5.1.1, 5.1.1_rackham, 5.1.5, 2016.1, 2016.6, 2018.6, 2018.6.th, 2019.1, 2019.1.th, 2019.6.th, 2020-GPU, 2021.1.th, .4.6 |
None |
| Chemistry/physics |
molcas |
molcas |
milou |
7.8.082, 8.0.15-03-08 |
user group license |
| Chemistry/physics |
molden |
molden |
rackham |
5.1 |
None |
| Chemistry/physics |
TmoleX |
TmoleX |
bianca irma milou rackham |
18 |
proprietary group license |
| Compilers and build tools |
ant |
ant |
bianca irma rackham snowy |
1.9.8, 1.10.0 |
Apache 2.0 |
| Compilers and build tools |
autoconf |
autoconf |
bianca irma milou rackham snowy |
2.68, 2.69 |
GPL |
| Compilers and build tools |
automake |
automake |
bianca irma rackham snowy |
1.14.1, 1.16.1 |
GPL |
| Compilers and build tools |
binutils |
binutils |
rackham bianca miarka snowy |
2.26, 2.28, 2.38, 2.39, 2.41 |
GPL v3 |
| Compilers and build tools |
ddt |
ddt |
bianca irma rackham snowy |
3.2.1, 5.0.1, 6.0, 6.1, 7.0 |
Commercial |
| Compilers and build tools |
flex |
flex |
rackham irma bianca snowy |
2.6.4 |
modified BSD |
| Compilers and build tools |
fpc |
fpc |
rackham irma bianca snowy |
3.0.4 |
GPL and LGPL |
| Compilers and build tools |
git |
git |
rackham bianca miarka snowy |
2.5.0, 2.10.2, 2.16.1, 2.21.0, 2.24.0, 2.28.0, 2.34.1, 2.44.0 |
LGPL 2.1 |
| Compilers and build tools |
git-lfs |
git-lfs |
rackham bianca miarka snowy |
2.9.1, 3.5.1 |
MIT |
| Compilers and build tools |
guile |
guile |
bianca irma milou rackham snowy |
1.8.8 |
LGPL 2.1 |
| Compilers and build tools |
java |
java |
bianca bianca irma irma milou milou rackham rackham snowy snowy |
jdk, OpenJDK, OpenJDK_11.0.2, OpenJDK_12+32, OpenJDK_17+35, OracleJDK, OracleJDK_11.0.9, sun_jdk1.6.0_04, sun_jdk1.6.0_18, sun_jdk1.6.0_45, sun_jdk1.7.0_25, sun_jdk1.8.0_40, sun_jdk1.8.0_92, sun_jdk1.8.0_151 |
Other |
| Compilers and build tools |
julia |
julia |
rackham bianca miarka snowy |
0.3.0-prerelease+3043, 0.3.11, 0.4.6, 1.1.1, 1.4.2, 1.6.1, 1.9.3 |
MIT |
| Compilers and build tools |
libtool |
libtool |
bianca irma milou rackham snowy |
2.4.6 |
GPL |
| Compilers and build tools |
maven |
maven |
bianca irma rackham snowy |
3.6.0 |
Apache 2.0 |
| Compilers and build tools |
meson |
meson |
rackham bianca miarka snowy |
0.49.2, 0.57.2, 1.1.0 |
None |
| Compilers and build tools |
mono |
mono |
bianca irma milou rackham snowy |
3.12.0, 5.8.1.0, 5.10.1.27 |
Custom open source |
| Compilers and build tools |
ninja |
ninja |
rackham irma bianca snowy |
1.9.0, 1.10.0 |
Apache 2.0 |
| Compilers and build tools |
patchelf |
patchelf |
bianca miarka milou rackham snowy |
0.1, 0.8 |
GPL v3 |
| Compilers and build tools |
perl |
perl |
rackham bianca miarka snowy |
5.18.2, 5.18.4, 5.22.2, 5.24.0, 5.24.1, 5.26.2, 5.32.1 |
GPL v1+ or Artistic License |
| Compilers and build tools |
perl6 |
perl6 |
bianca irma rackham snowy |
rakudo-star-2017.04, rakudo-star-2019.03 |
Artistic License 2.0 |
| Compilers and build tools |
perl_modules |
perl_modules |
rackham bianca miarka snowy |
5.18.4, 5.24.1, 5.26.2, 5.32.1 |
GPL v1+ or Artistic License |
| Compilers and build tools |
python |
None |
None |
2.5, 2.6, 2.6.1, 2.6.5, 2.6.6, 2.7, 2.7.1, 2.7.2, 2.7.4, 2.7.6, 2.7.9, 2.7.11, 2.7.15, 2.7i, 3.1, 3.1.2, 3.1.3, 3.2, 3.2.4, 3.3, 3.3.1, 3.4.3, 3.5.0, 3.6.0, 3.6.8, 3.7.2, 3.8.7, 3.9.5, 3.10.8, 3.11.8, 3.12.1, 3.12.7, python-rpath.tcl, python-set-LD_LIBRARY_PATH.tcl, python-set-LD_LIBRARY_PATH_new.tcl |
None |
| Compilers and build tools |
python3 |
None |
None |
3.6.0, 3.6.8, 3.7.2, 3.8.7, 3.9.5, 3.11.4, 3.11.8, 3.12.1, 3.12.7, python3-rpath.tcl |
None |
| Compilers and build tools |
ruby |
ruby |
bianca irma rackham snowy |
2.4.1, 2.5.0, 2.6.2 |
Ruby license |
| Compilers and build tools |
subversion |
None |
rackham irma bianca snowy |
1.9.3, 1.10.6 |
Apache License Version 2.0 |
| Engineering |
matlab |
None |
bianca rackham snowy |
7.4, 7.8, 7.10, 7.13, 8.0, 8.1, .matlab, .matlab_ny, .matlab_ny~, R2014a, R2015a, R2015b, R2016a, R2017a, R2018a, R2018b, R2019a, R2020b |
None |
| Geospatial |
CDO |
CDO |
rackham irma bianca snowy |
1.9.5, 1.9.7.1, 1.9.7.1-intel18.3 |
GPL v2 |
| Geospatial |
ecCodes |
ecCodes |
rackham irma bianca snowy |
2.13.1 |
None |
| Geospatial |
FYBA |
FYBA |
bianca irma milou rackham snowy |
4.1.1 |
Custom open-source "as is" |
| Geospatial |
GEOS |
GEOS |
rackham bianca miarka snowy |
3.5.0, 3.9.1-gcc9.3.0, 3.12.0-gcc12.3.0 |
LGPL v2.1 |
| Geospatial |
GOTM |
GOTM |
bianca irma rackham snowy |
5.3-221-gac7ec88d |
GPL v2 |
| Geospatial |
libgeotiff |
libgeotiff |
rackham bianca miarka snowy |
1.4.1, 1.4.3, 1.7.1 |
Mixed |
| Geospatial |
Magics |
Magics |
rackham irma bianca snowy |
3.3.1, 3.3.1-intel18.3 |
None |
| Geospatial |
NCO |
NCO |
bianca irma rackham snowy |
4.8.1, 4.9.2, 4.9.3 |
BSD |
| Geospatial |
PROJ |
None |
snowy rackham bianca irma |
6.3.2, 8.1.0 |
MIT |
| Geospatial |
PROJ.4 |
PROJ.4 |
bianca irma rackham snowy |
4.9.2, 4.9.3, 4.9.3-intel18.3 |
MIT |
| Geospatial |
QGIS |
QGIS |
rackham bianca miarka snowy |
3.4.12, 3.32.3 |
GPL license |
| Geospatial |
SHAPELIB |
SHAPELIB |
rackham irma bianca snowy |
1.5.0 |
None |
| Libraries |
ATLAS |
ATLAS |
bianca irma milou rackham snowy |
3.10.3 |
BSD-style |
| Libraries |
blas |
blas |
bianca irma milou rackham snowy |
3.6.0 |
Open source |
| Libraries |
boost |
boost |
rackham bianca miarka snowy |
1.41.0_gcc9.3.0, 1.44.0, 1.45.0, 1.55.0, 1.55.0_gcc4.8.3, 1.58.0-gcc8.3.0, 1.59.0_gcc4.9.2, 1.59.0_intel15.3, 1.60.0_gcc5.3.0, 1.61.0_gcc5.3.0, 1.63.0_gcc6.3.0, 1.63.0_gcc6.3.0_mpi2.0.2, 1.63.0_intel17.1, 1.66.0, 1.66.0-gcc8.3.0, 1.70.0_gcc9.1.0, 1.70.0_gcc9.1.0_mpi3.1.3, 1.70.0_gcc9.3.0, 1.70.0_gcc9.3.0_mpi3.1.5, 1.70.0_intel18.3, 1.70.0_intel18.3_intelmpi18.3, 1.70.0_intel18.3_mpi3.1.3, 1.75.0-gcc9.3.0, 1.78.0_gcc11.2.0, 1.78.0_gcc11.2.0_mpi4.1.2, 1.79.0_gcc11.2.0_mpi4.1.2, 1.81.0-gcc10.3.0, 1.83.0-gcc12.3.0, 1.83.0-gcc12.3.0-mpi4.1.5 |
Boost licence |
| Libraries |
bzip2 |
bzip2 |
rackham irma bianca miarka snowy |
1.0.6, 1.0.8 |
Custom open-source "AS IS" |
| Libraries |
cairo |
cairo |
rackham irma bianca snowy |
1.14.8, 1.14.12, 1.17.2, 1.17.4 |
LGPL v2.1 or Mozilla Public License 1.1 |
| Libraries |
deal.II |
deal.II |
bianca irma rackham snowy |
9.1.1-gcc, 9.1.1-intel |
GNU LGPL v2.1 or later |
| Libraries |
fftw |
fftw |
rackham irma bianca snowy |
3.3.8 |
GPL |
| Libraries |
freetype |
freetype |
rackham bianca miarka snowy |
2.6, 2.7.1, 2.10.1, 2.12.1 |
Freetype, GPL v2 |
| Libraries |
giflib |
giflib |
bianca irma milou rackham snowy |
5.1.4 |
Custom "as is" |
| Libraries |
glpk |
glpk |
bianca irma rackham snowy |
4.63, 4.65 |
GPL |
| Libraries |
gsl |
gsl |
rackham bianca miarka snowy |
1.16, 2.1, 2.3, 2.5, 2.6, 2.7 |
GPL |
| Libraries |
hdf4 |
hdf4 |
rackham irma bianca snowy |
4.2.11_gcc4.9.2, 4.2.14-gcc6.3.0 |
None |
| Libraries |
hdf5 |
hdf5 |
rackham bianca miarka snowy |
1.8.16_gcc4.9.2, 1.8.16_gcc5.3.0, 1.8.18, 1.8.18_gcc6.3.0, 1.10.1, 1.10.5, 1.10.5-threadsafe-intel18.3, 1.10.9, 1.14.0 |
HDF5 License |
| Libraries |
jemalloc |
jemalloc |
rackham bianca miarka snowy |
3.6.0, 5.0.1, 5.3.0 |
Custom open-source |
| Libraries |
libcurl |
libcurl |
rackham bianca miarka snowy |
7.45.0, 8.4.0 |
None |
| Libraries |
libharu |
libharu |
bianca irma milou rackham snowy |
2.3.0 |
ZLIB/LIBPNG License |
| Libraries |
libwebp |
libwebp |
rackham bianca miarka snowy |
1.0.3, 1.2.0, 1.3.0 |
BSD 3-clause |
| Libraries |
lpsolve |
lpsolve |
rackham irma bianca snowy |
5.5.2.9 |
LGPL v2 |
| Libraries |
netcdf |
netcdf |
bianca irma rackham snowy |
4.7.1, 4.7.1-intel18.3 |
Custom open source "as is" |
| Libraries |
NLopt |
NLopt |
rackham irma bianca snowy |
2.6.1 |
MIT |
| Libraries |
openblas |
openblas |
rackham bianca miarka snowy |
0.2.14a, 0.2.19, 0.2.19-singlethread, 0.2.20, 0.2.20-openmp, 0.2.20-singlethread, 0.3.21, 0.3.26 |
BSD 3-clause |
| Libraries |
pcre |
pcre |
bianca irma milou rackham snowy |
8.40 |
BSD 3-clause |
| Libraries |
PLplot |
PLplot |
rackham irma bianca snowy |
5.15.0, 5.15.0-old_wxWidgets |
LGPL v2 |
| Libraries |
Poppler |
Poppler |
rackham bianca miarka snowy |
0.43.0, 0.54.0, 0.75.0, 23.02.0, 23.09.0 |
GPL v2 |
| Libraries |
protobuf |
protobuf |
rackham bianca miarka snowy |
3.11.4, 24.3-gcc12.3.0 |
Google open-source AS IS |
| Libraries |
pslib |
pslib |
rackham irma bianca snowy |
0.4.6 |
GPL and LGPL |
| Libraries |
slurm-drmaa |
slurm-drmaa |
rackham bianca miarka snowy |
1.1.2-slurm19.05.8, 1.1.4-slurm23.02.5 |
GPL-3.0 |
| Libraries |
sparsehash |
None |
rackham irma bianca miarka snowy |
2.0.2, 2.0.3, 2.0.4 |
BSD 3-clause |
| Libraries |
szip |
None |
milou snowy |
2.1.1, 2.1_gcc4.9.2, 2.1_gcc5.3.0 |
None |
| Libraries |
tbb |
tbb |
milou |
4.4u1_gcc4.9.2, 4.4u1_intel15.3 |
GPL v2 |
| Libraries |
UDUNITS |
UDUNITS |
bianca irma rackham snowy |
2.2.26 |
Custom open source "as is" |
| Libraries |
wxWidgets |
wxWidgets |
rackham irma bianca snowy |
3.1.3-gtk2, 3.1.3-gtk3, 3.1.3-qt5 |
wxWindows Library Licence 3.1, https://github.com/wxWidgets/wxWidgets/blob/master/docs/licence.txt |
| Libraries |
Yeppp |
Yeppp |
bianca irma milou rackham snowy |
1.0.0 |
Custom open source "as is" |
| Libraries |
zlib |
zlib |
rackham bianca miarka snowy |
1.2.8, 1.2.11, 1.2.13, 1.3 |
None |
| Misc |
ABSOLUTE |
ABSOLUTE |
rackham bianca miarka snowy |
2023-6c98496 |
BSD 3 |
| Misc |
AdapterRemoval |
AdapterRemoval |
rackham bianca miarka snowy |
2.3.1, 2.3.4 |
GPLv3 |
| Misc |
AFNI |
AFNI |
rackham bianca miarka snowy |
24.3.08 |
None |
| Misc |
AGAT |
AGAT |
rackham bianca miarka snowy |
1.0.0, 1.3.2 |
GPL v3 |
| Misc |
alleleCount |
alleleCount |
rackham bianca miarka snowy |
4.2.1 |
AGPL v3 |
| Misc |
ANGSD |
ANGSD |
rackham bianca miarka snowy |
0.700, 0.902, 0.915, 0.940-stable |
GPL v2 |
| Misc |
any2fasta |
any2fasta |
rackham bianca miarka snowy |
0.4.2 |
GPL v3.0 |
| Misc |
Arlequin |
Arlequin |
rackham irma bianca miarka snowy |
3.5.2.2 |
None |
| Misc |
ARPIP |
ARPIP |
rackham bianca miarka snowy |
2023.10.02-ee32c10 |
None |
| Misc |
bamtools |
bamtools |
rackham bianca miarka snowy |
2.5.2 |
MIT |
| Misc |
bamUtil |
bamUtil |
rackham bianca miarka snowy |
1.0.15 |
GPL v3 |
| Misc |
bcftools |
bcftools |
rackham bianca miarka snowy |
1.2, 1.19 |
None |
| Misc |
Beagle |
Beagle |
rackham bianca miarka snowy |
4.1 |
GPL v3 |
| Misc |
bgen |
bgen |
rackham bianca miarka snowy |
1.1.6 |
Boost Software License v1.0 |
| Misc |
BioBakery |
BioBakery |
rackham bianca miarka snowy |
3.0, 3.1, 3.8 |
MIT license |
| Misc |
BioKIT |
BioKIT |
rackham irma bianca miarka snowy |
0.0.9 |
Other-d |
| Misc |
BioPerl |
None |
None |
1.6.1, 1.6.1_PERL5.10.1, 1.6.1_PERL5.12.3, 1.6.922, 1.6.923_Perl5.18.4, 1.7.8-perl5.32.1, .BioPerl |
None |
| Misc |
BUSCO |
BUSCO |
rackham bianca miarka snowy |
4.1.4, 5.3.1, 5.5.0, 5.7.1 |
MIT |
| Misc |
Cellsnp-lite |
Cellsnp-lite |
rackham irma bianca miarka snowy |
1.2.2 |
Apache License 2-0 |
| Misc |
CHEUI |
CHEUI |
rackham bianca miarka snowy |
20230518-c1c9ab6 |
GPL |
| Misc |
Chromium-cellranger-ATAC |
cellranger-ATAC |
rackham bianca miarka snowy |
1.2.0, 2.0.0, 2.1.0 |
None |
| Misc |
Citup |
Citup |
rackham irma bianca miarka snowy |
0.1.0 |
Other-d |
| Misc |
CRABS |
CRABS |
rackham irma bianca miarka snowy |
0.1.2 |
MIT License-d |
| Misc |
CRISPResso |
CRISPResso |
rackham bianca miarka snowy |
1.0.7, 2.3.1 |
None |
| Misc |
DamageProfiler |
DamageProfiler |
rackham bianca miarka snowy |
1.1 |
GPL v3 |
| Misc |
datamash |
datamash |
rackham bianca miarka snowy |
1.8 |
None |
| Misc |
DATES |
DATES |
rackham bianca miarka snowy |
4010 |
None |
| Misc |
dds-cli |
dds-cli |
rackham bianca miarka snowy milou transit |
latest |
Other |
| Misc |
deepTools |
deepTools |
rackham bianca miarka snowy |
3.5.5 |
mixed open-source |
| Misc |
EAGLE |
EAGLE |
rackham bianca miarka snowy |
1.1.3 |
GPL v3 |
| Misc |
FAN-C |
FAN-C |
rackham bianca miarka snowy |
0.9.26 |
None |
| Misc |
FastANI |
FastANI |
rackham bianca miarka snowy |
1.33, 1.34 |
Apache-2.0 |
| Misc |
fastK |
fastK |
rackham bianca miarka snowy |
1.1.0 |
AS IS |
| Misc |
fastp |
fastp |
rackham bianca miarka snowy |
0.23.4 |
MIT |
| Misc |
fgbio |
fgbio |
rackham bianca miarka snowy |
2.2.1-0 |
MIT |
| Misc |
fineRADstructure |
fineRADstructure |
rackham bianca miarka snowy |
0.3.1 |
Creative Commons 3.0 |
| Misc |
FLAMES |
FLAMES |
rackham bianca miarka snowy |
20221109-774e16a |
GPL v3 |
| Misc |
FLASH |
FLASH |
rackham bianca miarka snowy |
2.2.00 |
GPL v3 |
| Misc |
freebayes |
freebayes |
rackham bianca miarka snowy |
1.3.6, 1.3.8 |
MIT |
| Misc |
fsl |
fsl |
rackham bianca miarka snowy |
6.0, 6.0.3 |
None |
| Misc |
gffread |
gffread |
rackham bianca miarka snowy |
0.12.7 |
MIT |
| Misc |
GLIMPSE |
GLIMPSE |
rackham bianca miarka snowy |
1.1.1, 2.0.0 |
MIT |
| Misc |
grenedalf |
grenedalf |
rackham bianca miarka snowy |
0.3.0, 0.5.1, 0.6.0 |
GPL3 |
| Misc |
GTDB-Tk |
GTDB-Tk |
rackham bianca miarka snowy |
0.3.2, 1.5.0, 2.3.2, 2.4.0 |
GPLv3 |
| Misc |
Guppy |
Guppy |
snowy miarka bianca |
5.0.16-cpu, 5.0.16-gpu, 6.0.6-cpu, 6.0.6-gpu, 6.3.7-cpu, 6.3.7-gpu, 6.4.2-cpu, 6.4.2-gpu, 6.5.7-cpu, 6.5.7-gpu |
Custom |
| Misc |
halla |
halla |
rackham bianca miarka snowy |
0.8.20 |
MIT |
| Misc |
HiCExplorer |
HiCExplorer |
rackham bianca miarka snowy |
2.2-beta, 3.7.3 |
GPL v3 |
| Misc |
htslib |
htslib |
rackham bianca miarka snowy |
1.2, 1.19 |
None |
| Misc |
HUMAnN |
HUMAnN |
rackham bianca miarka snowy |
3.6, 3.8 |
MIT license |
| Misc |
IGVtools |
IGVtools |
rackham bianca miarka snowy |
2.8.13, 2.16.0 |
MIT |
| Misc |
Juicebox |
Juicebox |
rackham irma bianca miarka snowy |
1.11.08 |
MIT License |
| Misc |
KING |
KING |
rackham bianca miarka snowy |
2.3.2 |
None |
| Misc |
kingfisher |
kingfisher |
rackham bianca miarka snowy |
0.3.0 |
GPL v3 |
| Misc |
KMC |
KMC |
rackham bianca miarka snowy |
3.2.2 |
GPL v3 |
| Misc |
KneadData |
KneadData |
rackham bianca miarka snowy |
0.12.0 |
MIT license |
| Misc |
Kraken2 |
Kraken2 |
rackham bianca miarka snowy |
2.1.3-20231102-acc2248 |
MIT |
| Misc |
KrakenUniq |
KrakenUniq |
rackham bianca miarka snowy |
0.6, 1.0.0, 1.0.1 |
GPLv3, MIT |
| Misc |
Krona |
Krona |
rackham bianca miarka snowy |
2.7.1, 2.8.1-20211222-d1479b3 |
None |
| Misc |
ldsc |
ldsc |
rackham bianca miarka snowy |
1.0.0, 1.0.1, 2.0.1 |
GPL v3 |
| Misc |
MACS |
MACS |
rackham bianca miarka snowy |
1.4.1, 1.4.2, 3.0.0b1 |
BSD 3-clause |
| Misc |
MAGeCK2 |
MAGeCK2 |
rackham irma bianca miarka snowy |
20211209-435eacd |
BSD3 |
| Misc |
mash |
mash |
rackham bianca miarka snowy |
2.0, 2.3, 2.3-20210519-41ddc61 |
Custom open-source |
| Misc |
meryl |
meryl |
rackham bianca miarka snowy |
1.4.1 |
Mixed open source |
| Misc |
METAL |
METAL |
rackham bianca miarka snowy |
2020-05-05 |
open source |
| Misc |
MetaXcan |
MetaXcan |
rackham irma bianca miarka snowy |
20210925-cfc9e36 |
MIT License-d |
| Misc |
metilene |
metilene |
rackham bianca miarka snowy |
0.2-8 |
GPL v2 |
| Misc |
mgatk |
mgatk |
rackham bianca miarka snowy |
0.7.0 |
MIT |
| Misc |
Minimac4 |
Minimac4 |
rackham bianca miarka snowy |
4.1.6 |
GPL-3.0 |
| Misc |
mirdeep2 |
mirdeep2 |
rackham bianca miarka snowy |
2.0.1.3-20220221-c6440e2 |
GPL v3 |
| Misc |
miRDP2 |
miRDP2 |
rackham bianca miarka snowy |
1.1.4, 1.1.5 |
GPL v3 |
| Misc |
modkit |
modkit |
rackham bianca miarka snowy |
0.2.5-rc2, 0.3.1, 0.3.3, 0.4.1 |
GPL v3 |
| Misc |
mosdepth |
mosdepth |
rackham bianca miarka snowy |
0.3.3 |
MIT |
| Misc |
Mothur |
Mothur |
rackham bianca miarka snowy |
1.25.1, 1.30.1, 1.33.3, 1.36.1, 1.38.1, 1.48.0 |
None |
| Misc |
MRIcroGL |
MRIcroGL |
rackham bianca miarka snowy |
1.2.20220720 |
BSD 2 |
| Misc |
msisensor-pro |
msisensor-pro |
rackham bianca miarka snowy |
1.2.0 |
None |
| Misc |
MultiQC |
MultiQC |
rackham bianca miarka snowy |
1.22.2 |
MIT |
| Misc |
NCBI-datasets |
NCBI-datasets |
rackham bianca miarka snowy |
15.29.0, 16.35.0 |
Public Domain, US Government |
| Misc |
ont_h5_validator |
ont_h5_validator |
rackham bianca miarka snowy |
2.0.1 |
None |
| Misc |
picard |
picard |
rackham bianca miarka snowy |
3.1.1 |
MIT |
| Misc |
Pisces |
Pisces |
rackham bianca miarka snowy |
5.3.0.0 |
GPL 3 |
| Misc |
plink2 |
plink2 |
rackham bianca miarka snowy |
2.00-alpha-3.7-20221024, 2.00-alpha-5-20230923 |
GPL v3 |
| Misc |
preseq |
preseq |
rackham bianca miarka snowy |
3.2 |
GPL v3 |
| Misc |
PROJ |
PROJ |
rackham bianca miarka snowy |
9.1.1 |
MIT |
| Misc |
PyClone-VI |
PyClone-VI |
rackham irma bianca miarka snowy |
20210623-6607ea1 |
GPL V3-d |
| Misc |
pyega3 |
pyega3 |
rackham bianca miarka snowy |
5.1.0 |
None |
| Misc |
Raremetal |
Raremetal |
rackham bianca miarka snowy |
4.15.1 |
None |
| Misc |
regenie |
regenie |
rackham bianca miarka snowy |
3.4.1 |
MIT |
| Misc |
removethis |
removethis |
rackham irma bianca miarka snowy |
1 |
None |
| Misc |
RepeatModeler |
RepeatModeler |
rackham bianca miarka snowy |
2.0.4 |
None |
| Misc |
RGT |
RGT |
rackham bianca miarka snowy |
1.0.2 |
GPL v3 |
| Misc |
rtgcore |
rtgcore |
rackham bianca miarka snowy |
3.12.1 |
Custom |
| Misc |
rtgtools |
rtgtools |
rackham bianca miarka snowy |
3.12.1 |
BSD 2-clause |
| Misc |
samtools |
samtools |
rackham bianca miarka snowy |
1.2, 1.19 |
None |
| Misc |
schmutzi |
schmutzi |
rackham bianca miarka snowy |
1.5.7 |
GPL v3 |
| Misc |
scikit-allel |
scikit-allel |
rackham bianca miarka snowy |
1.3.5 |
None |
| Misc |
scvi-tools |
scvi-tools |
rackham bianca miarka snowy |
1.0.4 |
BSD-3 |
| Misc |
SeqKit |
SeqKit |
rackham bianca miarka snowy |
2.4.0 |
MIT |
| Misc |
SeqLib |
SeqLib |
rackham bianca miarka snowy |
1.2.0 |
Apache 2.0 |
| Misc |
seqstats |
seqstats |
rackham bianca miarka snowy |
20170404-e6f482f |
MIT |
| Misc |
SHAPEIT |
SHAPEIT |
rackham bianca miarka snowy |
v4.2.2, v5.1.1 |
None |
| Misc |
slivar |
slivar |
rackham irma bianca miarka snowy |
0.2.7 |
MIT License-d |
| Misc |
SMC++ |
SMC++ |
rackham bianca miarka snowy |
1.15.4, 1.15.5.dev12+g8bdecdf |
GPL v3 |
| Misc |
smudgeplot |
smudgeplot |
rackham bianca miarka snowy |
0.3, 0.4.0 |
Apache-2.0 |
| Misc |
sracat |
sracat |
rackham bianca miarka snowy |
20210916-b896745 |
BSD 3-Clause |
| Misc |
sratools |
sratools |
rackham bianca miarka snowy |
3.0.7 |
custom |
| Misc |
Stacks |
Stacks |
rackham bianca miarka snowy |
2.66 |
GPL v3 |
| Misc |
SVDB |
SVDB |
rackham bianca miarka snowy |
2.8.1 |
MIT |
| Misc |
truvari |
truvari |
rackham bianca miarka snowy |
4.3.1 |
MIT |
| Misc |
vcflib |
vcflib |
rackham bianca miarka snowy |
1.0.9 |
MIT |
| Misc |
vcfstats |
vcfstats |
rackham bianca miarka snowy |
0.4.2 |
Other |
| Misc |
vep |
vep |
rackham bianca miarka snowy |
110.1, 111.0, 113.0 |
Apache-2.0 |
| Misc |
XP-CLR |
XP-CLR |
rackham bianca miarka snowy |
1.1.2 |
MIT |
| Misc applications |
agrep |
agrep |
bianca irma milou rackham snowy |
3.41.5 |
ISC Open Source |
| Misc applications |
awscli |
awscli |
rackham bianca miarka snowy |
1.11.140, 1.16.225, 1.29.52 |
Apache 2.0 |
| Misc applications |
circos |
circos |
rackham irma bianca snowy |
0.69-9 |
GPL |
| Misc applications |
cmake |
cmake |
rackham irma bianca snowy |
3.5.1, 3.7.2, 3.13.2, 3.17.3 |
BSD 3-clause |
| Misc applications |
cowsay |
cowsay |
bianca irma milou rackham snowy |
3.03 |
Artistic License |
| Misc applications |
Cromwell |
Cromwell |
rackham bianca miarka snowy |
71, 86 |
BSD 3-Clause |
| Misc applications |
doxygen |
doxygen |
bianca irma milou rackham snowy |
1.8.11 |
Gnu GPL 2 |
| Misc applications |
emacs |
emacs |
rackham bianca miarka snowy |
25.1, 25.2, 27.2, 28.2 |
GNU |
| Misc applications |
gawk |
gawk |
bianca irma milou rackham snowy |
4.1.4 |
GPL v3 |
| Misc applications |
gdl |
gdl |
bianca irma rackham snowy |
1.0.0-rc.1 |
GPL v2 |
| Misc applications |
GhostPDL |
GhostPDL |
rackham irma bianca snowy |
9.53.3 |
Gnu GPL Affero v3 |
| Misc applications |
gnuplot |
None |
None |
4.4.3, 4.6.5, 5.0.7, 5.2.7, .gnuplot |
None |
| Misc applications |
Graphviz |
Graphviz |
rackham bianca miarka snowy |
2.40.1, 9.0.0 |
Common Public License Version 1.0 |
| Misc applications |
groff |
groff |
bianca irma milou rackham |
1.22.3 |
GPL |
| Misc applications |
h5utils |
h5utils |
bianca irma milou rackham snowy |
1.12.1 |
GPL v2+ |
| Misc applications |
haskell-stack |
None |
bianca irma milou rackham snowy |
1.0.4.3, 1.4.0, 1.7.1 |
None |
| Misc applications |
jq |
jq |
rackham miarka bianca snowy |
1.6 |
MIT |
| Misc applications |
MariaDB |
MariaDB |
bianca irma milou rackham snowy |
10.2.11 |
GPL v2 |
| Misc applications |
mbuffer |
mbuffer |
bianca irma milou rackham snowy |
20151002 |
GPL v3 |
| Misc applications |
mcl |
mcl |
rackham bianca miarka snowy |
14-137, 22-282 |
GPL v3 |
| Misc applications |
metaWRAP |
metaWRAP |
rackham irma bianca snowy |
1.3.2 |
MIT |
| Misc applications |
openbabel |
openbabel |
rackham bianca miarka snowy |
3.1.1-gcc9.3.0, 3.1.1-gcc12.3.0 |
GPL v2 |
| Misc applications |
OpenBUGS |
OpenBUGS |
rackham irma bianca snowy |
3.2.3 |
GPL v2 |
| Misc applications |
p7zip |
p7zip |
bianca irma milou rackham snowy |
16.02 |
LGPLv2 |
| Misc applications |
pandoc |
pandoc |
rackham irma bianca snowy |
1.16.0.2, 2.2.3.2, 2.10.1 |
GPL 2 |
| Misc applications |
PostgreSQL |
PostgreSQL |
bianca irma milou rackham snowy |
10.3 |
PostgreSQL Licence |
| Misc applications |
povray |
povray |
bianca irma rackham |
3.7 |
AGPL v3 |
| Misc applications |
ROOT |
ROOT |
rackham irma bianca snowy |
6.04.08, 6.06.08, 6.20.04 |
LGPL 2.1 |
| Misc applications |
SAIGE |
SAIGE |
rackham irma bianca snowy |
0.42.1 |
GPL v3 |
| Misc applications |
SCons |
None |
None |
2.5.0, .scons |
None |
| Misc applications |
sqlite |
sqlite |
rackham bianca miarka snowy |
3.8.5, 3.11.1, 3.16.2, 3.24.0, 3.34.0, 3.45.0 |
public domain |
| Misc applications |
swig |
swig |
rackham bianca miarka snowy |
3.0.7, 3.0.12, 4.1.1 |
GPL with other advice |
| Misc applications |
texinfo |
texinfo |
rackham bianca miarka snowy |
6.0, 6.5, 6.6, 6.8, 7.1 |
GPL v3+ |
| Misc applications |
texlive |
texlive |
rackham bianca miarka snowy |
2015, 2016, 2018, 2019, 2021, 2023-08-14, 2024-04-24 |
None |
| Misc applications |
tinyutils |
None |
None |
1.1, 1.2, 1.3, 1.4, .tinyutils-1.1 |
None |
| Misc applications |
tmux |
tmux |
rackham bianca miarka snowy |
2.5, 3.1b, 3.3a |
Custom open-source AS IS |
| Misc applications |
vim |
None |
rackham irma bianca snowy |
8.0-1360, 8.1-1053, 8.2.3701 |
VIM License |
| Misc applications |
xz |
xz |
rackham bianca miarka snowy |
5.2.2, 5.2.6, 5.4.5 |
Mixed open-source |
| Parallel |
gnuparallel |
gnuparallel |
rackham bianca miarka snowy |
20140222, 20150522, 20170122, 20180822, 20230422 |
GPL v3+ |
| Phylogeny |
Dsuite |
Dsuite |
rackham bianca miarka snowy |
0.5-r57 |
open-source |
| Phylogeny |
FastME |
FastME |
rackham bianca miarka snowy |
2.1.6.2, 2.1.6.4 |
GPL |
| Phylogeny |
FastTree |
FastTree |
rackham bianca miarka snowy |
2.1.11 |
GPL v2+ |
| Phylogeny |
G-Nomix |
G-Nomix |
rackham bianca miarka snowy |
2022-09-18-de952a2 |
free for academic use |
| Phylogeny |
HyPhy |
HyPhy |
rackham bianca miarka snowy |
2.5.51-mpi |
None |
| Phylogeny |
iqtree |
iqtree |
rackham bianca miarka snowy |
2.2.2.6-omp-mpi |
GPL v2 |
| Phylogeny |
KIN |
KIN |
rackham bianca miarka snowy |
3.1.3, 3.1.3-20230612-76dc469 |
GPL v3 |
| Phylogeny |
MetaPhlAn4 |
MetaPhlAn4 |
rackham bianca miarka snowy |
4.0 |
MIT license |
| Phylogeny |
paml |
paml |
rackham bianca miarka snowy |
4.10.7 |
other |
| Phylogeny |
pathPhynder |
None |
rackham irma bianca snowy |
1.a-20221011-a407a97, 2020-12-19-b8532c0 |
MIT |
| Phylogeny |
phylip |
phylip |
rackham bianca miarka snowy |
3.697 |
None |
| Phylogeny |
PhyloPhlAn |
PhyloPhlAn |
rackham bianca miarka snowy |
3.0.3 |
MIT license |
| Phylogeny |
phyx |
phyx |
rackham bianca miarka snowy |
1.3 |
GPL-3.0 |
| Phylogeny |
read2tree |
read2tree |
rackham bianca miarka snowy |
0.1.5-20240117-ff2d167 |
MIT |
| Phylogeny |
snphylo |
snphylo |
rackham bianca miarka snowy |
20180901 |
None |
| Pipelines |
3D-DNA |
3D-DNA |
rackham irma bianca miarka snowy |
20190801-529ccf4 |
MIT License |
| Pipelines |
biomodal |
biomodal |
rackham bianca miarka snowy |
1.0.2 |
commercial |
| Pipelines |
cactus_atac |
cactus_atac |
rackham bianca miarka snowy |
1.0.0 |
MIT |
| Pipelines |
cutadapt |
cutadapt |
rackham bianca miarka snowy |
4.5, 4.8 |
MIT |
| Pipelines |
GenoPredPipe |
GenoPredPipe |
rackham bianca miarka snowy |
20211104-02777ce, 20221121-e3caf6b |
GNU GPL v3 |
| Pipelines |
happy |
happy |
rackham bianca miarka snowy |
1.0.0 |
MIT |
| Pipelines |
Juicer |
Juicer |
rackham bianca miarka snowy |
1.6, 2.0 |
MIT License |
| Pipelines |
Juicer_tools |
Juicer_tools |
rackham irma bianca miarka snowy |
1.6, 1.22.01 |
MIT License |
| Pipelines |
MPRASuite |
MPRASuite |
rackham bianca miarka snowy |
1.0.3 |
MIT |
| Pipelines |
nextNEOpi |
nextNEOpi |
rackham bianca miarka snowy |
1.4.0 |
https://github.com/icbi-lab/nextNEOpi/blob/master/LICENSE |
| Pipelines |
nf-core |
nf-core |
rackham bianca miarka snowy |
2.4.1, 2.6, latest |
MIT License |
| Pipelines |
Panaroo |
Panaroo |
rackham bianca miarka snowy |
1.2.10, 1.3.2 |
MIT |
| Pipelines |
ParseBiosciences-Pipeline |
ParseBiosciences-Pipeline |
rackham bianca miarka snowy |
1.4.0 |
Custom |
| Pipelines |
qiime2 |
qiime2 |
rackham bianca miarka snowy |
2024.1, 2024.2 |
BSD 3-Clause |
| Pipelines |
SALSA |
SALSA |
rackham irma bianca miarka snowy |
20220408-ed76685 |
MIT License |
| Pipelines |
Seurat |
Seurat |
rackham bianca miarka snowy |
5.0.2, 5.1.0 |
MIT |
| Pipelines |
SMRT |
SMRT |
rackham bianca miarka snowy |
13.0.0.207600 |
None |
| Pipelines |
snakemake |
snakemake |
rackham bianca miarka snowy |
5.32.2, 8.20.1 |
MIT License |
| Pipelines |
star-fusion |
star-fusion |
rackham bianca miarka snowy |
1.9.1, 1.10.1 |
BSD 3-clause |
| Pipelines |
ViWrap |
ViWrap |
rackham bianca miarka snowy |
1.3.0 |
GPL v3 |
| Statistics |
nonmem |
None |
rackham irma bianca snowy |
7.3.0, 7.4.3, 7.4.4, 7.5.0 |
Commercial |
| Statistics |
PsN |
PsN |
rackham irma bianca snowy |
5.0.0 |
GPL 2+ |
| Statistics |
R |
None |
None |
2.8, 2.8.1, 2.10, 2.10.1, 2.11.1, 2.12.1, 2.12.2, 2.13.0, 2.14.0, 2.15.0, 2.15.1, 2.15.2, 3.0.1, 3.0.2, 3.1.0, 3.2.2, 3.2.3, 3.3.0, 3.3.1, 3.3.2, 3.3.2_rackham, 3.4.0, 3.4.3, 3.5.0, 3.5.2, 3.6.0, 3.6.1, 4.0.0, 4.0.4, 4.1.1, 4.2.1, 4.3.1, 4.3.2, 4.4.1, .R, R.tcl |
None |
| Statistics |
R_packages |
R_packages |
rackham bianca miarka snowy |
3.3.0, 3.3.1, 3.3.2, 3.4.0, 3.4.3, 3.5.0, 3.5.2, 3.6.0, 3.6.1, 4.0.0, 4.0.4, 4.1.1, 4.3.1 |
Various |
| Statistics |
RStudio |
RStudio |
rackham bianca miarka snowy |
1.0.136, 1.0.143, 1.0.153, 1.1.423, 1.1.463, 1.4.1106, 2022.02.0-443, 2022.02.3-492, 2022.07.1-554, 2023.06.0-421, 2023.06.2-561, 2023.12.1-402, 2024.04.2-764 |
Custom |
| Sw_collections |
bbmap |
bbmap |
rackham bianca miarka snowy |
39.06, 39.08 |
Public Domain |
| Sw_collections |
BEDOPS |
BEDOPS |
rackham bianca miarka snowy |
2.4.41 |
GPL v2 |
| Sw_collections |
BEDTools |
BEDTools |
rackham bianca miarka snowy |
2.20.1, 2.31.1 |
MIT |
| Sw_collections |
cellbender |
cellbender |
rackham bianca miarka snowy |
0.3.0 |
BSD-3 |
| Sw_collections |
Chromium-cellranger |
cellranger |
rackham bianca miarka snowy |
4.0.0, 5.0.1, 6.0.2, 6.1.2, 7.0.0, 7.0.1, 7.1.0, 8.0.1 |
None |
| Sw_collections |
Chromium-cellranger-ARC |
cellranger-ARC |
rackham bianca miarka snowy |
1.0.0, 2.0.2 |
https://support.10xgenomics.com/docs/license |
| Sw_collections |
DRAGEN |
DRAGEN |
rackham bianca miarka snowy |
4.1.5 |
None |
| Sw_collections |
GATK |
GATK |
rackham bianca miarka snowy |
1.0.4105, 1.0.5365, 1.0.5909, 1.2.12, 1.4.5, 1.4.21, 1.5.11, 1.5.21, 2.1.13, 2.3.6, 2.5.2, 2.7.2, 2.8.1, 3.1.1, 3.2.0, 3.2.2, 3.3.0, 3.4-46, 3.4.0, 3.4.46, 4.0.8.0, 4.1.4.1, 4.3.0.0 |
None |
| Sw_collections |
MEMEsuite |
MEMEsuite |
rackham bianca miarka snowy |
4.11.1, 4.11.2_1, 5.1.1, 5.5.1 |
University of California open-source AS IS |
| Sw_collections |
SpeedPPI |
SpeedPPI |
rackham bianca miarka snowy |
2023.07.11-37d0a03 |
None |
| Uncategorized |
alphafold |
alphafold |
rackham bianca miarka snowy |
2.3.1 |
None |
| Uncategorized |
alphafold_dataset |
alphafold_dataset |
rackham bianca miarka snowy |
2.0.0, 2.1.1, 2.3.1 |
None |
| Uncategorized |
Amber |
None |
snowy |
16-GPU, 18-GPU |
None |
| Uncategorized |
amber_previous |
None |
None |
amber.tcl, ambertools18_intel_python2 |
None |
| Uncategorized |
AmpliconNoise |
None |
bianca miarka rackham snowy |
1.27 |
None |
| Uncategorized |
AnnotSV |
None |
bianca irma rackham snowy |
1.1.1 |
None |
| Uncategorized |
annovar_data |
None |
bianca miarka rackham snowy |
2019.10.21, 2021.05.18 |
None |
| Uncategorized |
Ansys |
Ansys |
rackham bianca miarka snowy |
19.1, 19.5, 2020R1, 2023R2 |
commercial software |
| Uncategorized |
apr |
None |
rackham irma bianca snowy |
1.7.0 |
Apache License 2.0 |
| Uncategorized |
apr-util |
None |
rackham irma bianca snowy |
1.6.1 |
Apache License Version 2.0 |
| Uncategorized |
archspec |
archspec |
rackham bianca miarka snowy |
0.2.4 |
Apache 2.0, MIT |
| Uncategorized |
aria2 |
aria2 |
rackham bianca miarka snowy |
1.36 |
OpenSSL |
| Uncategorized |
Armadillo |
None |
rackham irma bianca snowy |
7.900.0, 9.700.2 |
Apache License V2.0 |
| Uncategorized |
ascp |
ascp |
rackham bianca miarka snowy |
4.2.0.183804, 4.4.3.891 |
None |
| Uncategorized |
athena |
None |
bianca miarka rackham snowy |
1.1 |
None |
| Uncategorized |
BackSPIN |
None |
rackham irma bianca snowy |
20171211_2fbcf5d |
BSD 2-Clause |
| Uncategorized |
BAM-matcher |
None |
None |
20160611, .bammatcher, .bammatcher~ |
None |
| Uncategorized |
Bandage |
None |
milou |
0.8.0 |
None |
| Uncategorized |
bazel |
bazel |
rackham bianca miarka snowy |
7.0.0-pre.20230917.3 |
None |
| Uncategorized |
bcftools-MoCha |
None |
rackham irma bianca snowy |
1.9-20191129, 1.11-20210315, 2019-11-29 |
None |
| Uncategorized |
BclConverter |
None |
bianca irma milou rackham snowy |
1.7.1 |
None |
| Uncategorized |
BioBakery_data |
BioBakery_data |
rackham bianca miarka snowy |
3.0-20210423, 3.1-20231102 |
None |
| Uncategorized |
BisSNP |
None |
None |
0.82.2, .bissnp |
None |
| Uncategorized |
BLAKE2 |
BLAKE2 |
rackham bianca miarka snowy |
20230212-ed1974e |
CC0-1.0 or OpenSSL or Apache Public Licence 2.0 |
| Uncategorized |
Bracken |
None |
rackham irma bianca snowy |
2.5 |
GPL v3 |
| Uncategorized |
bubblewrap |
bubblewrap |
rackham irma bianca miarka snowy |
0.6.2 |
LGPL v2+ |
| Uncategorized |
BUSCO_data |
BUSCO_data |
rackham bianca miarka snowy |
latest |
None |
| Uncategorized |
CAMMiQ |
None |
rackham irma bianca miarka snowy |
20211015-6142150 |
MIT License |
| Uncategorized |
CAP3 |
None |
milou |
08-06-13, .CAP3, CAP3 |
None |
| Uncategorized |
capnproto |
capnproto |
rackham bianca miarka snowy |
1.0.2 |
MIT |
| Uncategorized |
CAT |
None |
rackham irma bianca snowy |
20190926-e25443 |
Apache License 2.0 |
| Uncategorized |
cellranger-ARC-data |
None |
bianca irma rackham snowy |
2020-A |
None |
| Uncategorized |
cellranger-ATAC-data |
None |
bianca irma rackham snowy |
1.2.0, 2.0.0 |
None |
| Uncategorized |
cellranger-data |
cellranger-data |
rackham bianca miarka snowy |
1.1.0, 1.2.0, 3.0.0, 2020-A, 2024-A |
None |
| Uncategorized |
cellranger-DNA-data |
None |
bianca irma rackham snowy |
1.0.0 |
None |
| Uncategorized |
cellranger-VDJ-data |
cellranger-VDJ-data |
rackham bianca miarka snowy |
4.0.0, 5.0.0, 7.1.0 |
None |
| Uncategorized |
chain_files |
chain_files |
rackham bianca miarka snowy |
20230825 |
Open access |
| Uncategorized |
ChEMBL |
ChEMBL |
rackham bianca miarka snowy |
22.1, 33 |
Creative Commons Attribution-ShareAlike 3.0 Unported license |
| Uncategorized |
ChimeraSlayer |
None |
bianca miarka rackham snowy |
20110519 |
None |
| Uncategorized |
Chromium-cellranger-DNA |
None |
rackham irma bianca snowy |
1.1.0 |
https://support.10xgenomics.com/docs/license |
| Uncategorized |
Chromium-longranger |
None |
rackham irma bianca snowy |
2.2.2 |
Misc non-commercial |
| Uncategorized |
Chromium-spaceranger |
None |
rackham irma bianca snowy |
1.0.0 |
None |
| Uncategorized |
circlator |
None |
rackham irma bianca snowy |
1.5.5 |
GNU General Public License v3.0 |
| Uncategorized |
clapack |
clapack |
rackham bianca miarka snowy |
3.2.1 |
Public domain |
| Uncategorized |
clearcut |
None |
bianca irma rackham snowy |
1.0.9 |
None |
| Uncategorized |
ClonalFrameML |
None |
bianca irma milou rackham snowy |
1.11-4f13f23 |
None |
| Uncategorized |
conda |
None |
rackham irma bianca snowy |
latest |
© Copyright 2017, Anaconda, Inc. Revision 6be5194b. |
| Uncategorized |
coreutils |
None |
bianca irma milou rackham snowy |
8.25, 8.27 |
None |
| Uncategorized |
CPLEXOptimizationStudio |
None |
rackham irma bianca miarka snowy |
12.9.0, 20.1 |
IBM Academic |
| Uncategorized |
CROP |
None |
rackham irma bianca miarka snowy |
1.33 |
Other-d |
| Uncategorized |
CS-Rosetta |
None |
rackham irma bianca snowy |
1.01_Rosetta_3.7 |
None |
| Uncategorized |
CST_Studio |
CST_Studio |
rackham bianca miarka snowy |
2023.0 |
None |
| Uncategorized |
CTAT_RESOURCE_LIB |
None |
bianca miarka rackham snowy |
2017-11, 2018-02, 2019-08 |
None |
| Uncategorized |
cuda |
cuda |
rackham bianca miarka snowy |
11.2.1, 11.7.0, 11.8.0, 12.0.0, 12.1.0, 12.1.1, 12.2.0, 12.2.2 |
EULA |
| Uncategorized |
cuDNN |
cuDNN |
rackham bianca miarka snowy |
8.1.0.77, 8.4.1.50, 8.6.0.163, 8.7.0.84, 8.8.0.121, 8.9.2.26 |
SLA |
| Uncategorized |
CUT-RUNTools |
None |
rackham irma bianca miarka snowy |
2 |
MIT |
| Uncategorized |
cyrus-sasl |
None |
rackham irma bianca snowy |
2.1.27 |
None |
| Uncategorized |
darsync |
darsync |
rackham bianca miarka snowy |
20240208-7ff09d9 |
None |
| Uncategorized |
dbCAN |
dbCAN |
rackham bianca miarka snowy |
11 |
None |
| Uncategorized |
DBdeployer |
DBdeployer |
rackham irma bianca miarka snowy |
latest |
Apache-2 |
| Uncategorized |
ddt-perf |
None |
milou rackham |
7.0 |
None |
| Uncategorized |
desmond |
desmond |
rackham irma bianca miarka snowy |
2022-2 |
gpl |
| Uncategorized |
Dfam |
Dfam |
rackham bianca miarka snowy |
3.7, 3.8 |
Creative Commons Zero CC0 |
| Uncategorized |
Dfam-TE-Tools |
None |
rackham irma bianca snowy |
1.4 |
CC0 1.0 Universal |
| Uncategorized |
DFTB+ |
None |
rackham snowy |
19.1 |
GNU LGPL-3 |
| Uncategorized |
dlib |
None |
bianca irma rackham snowy |
19.15 |
None |
| Uncategorized |
dssp |
None |
None |
2.0.4 |
None |
| Uncategorized |
edlib |
edlib |
rackham bianca miarka snowy |
1.2.7 |
MIT |
| Uncategorized |
Eigen |
None |
bianca irma rackham snowy |
3.3.4 |
None |
| Uncategorized |
eLSA |
None |
bianca irma milou rackham |
20160907-febe2d7a57c8 |
None |
| Uncategorized |
ESPResSo |
None |
rackham |
4.1.4 |
GPLv3 |
| Uncategorized |
estout |
None |
rackham irma bianca snowy |
20200417-d392e71 |
MIT license |
| Uncategorized |
fastq_screen_data |
fastq_screen_data |
rackham bianca miarka snowy |
20220330 |
None |
| Uncategorized |
freesurfer |
freesurfer |
rackham bianca miarka snowy |
6.0.0, 7.4.1 |
Custom open-source |
| Uncategorized |
funannotate_data |
funannotate_data |
rackham bianca miarka snowy |
1.8.17 |
BSD-2 |
| Uncategorized |
GAAS |
None |
rackham irma bianca miarka snowy |
1.2.0 |
GPL v3 |
| Uncategorized |
gamess |
None |
bianca irma rackham |
20070324R1, 20070324R1-kalkyl, 20101001R1-kalkyl-intel-12.1-mvapich2, 20110818R1-kalkyl-intel12.0-mvapich2, 20170930 |
None |
| Uncategorized |
gaussian |
None |
milou rackham snowy |
.g09, .gaussian, .gv, .gv~, g03, g03.d02, g03.e01, g09, g09.a02, g09.c01, g09.d01 |
None |
| Uncategorized |
gaussview |
None |
None |
5.0.8, .gv, .gv~ |
None |
| Uncategorized |
gcc |
None |
None |
4.2.3, 4.3.0, 4.3.2, 4.3.2-test, 4.3.2t, 4.4, 4.4.2, 4.4.3, 4.4.4, 4.5.0, 4.6.2, gcc, gcc4.3, gcc4.4, gcc4.5, gcc4.6.tcl |
None |
| Uncategorized |
gdb |
None |
rackham irma bianca miarka snowy |
11.2 |
Other-d |
| Uncategorized |
gdc |
None |
None |
2.064.2_4.8, .gdc |
None |
| Uncategorized |
genomescope |
None |
rackham irma bianca snowy |
1.0.0_d2aefdd |
Apache-2.0 |
| Uncategorized |
genomescope2.0 |
None |
rackham irma bianca snowy |
1.0.0_5034ed4 |
Apache-2.0 |
| Uncategorized |
GetOrganelleDB |
GetOrganelleDB |
rackham bianca miarka snowy |
0.0.1, 0.0.2 |
GPLv3 |
| Uncategorized |
glib |
glib |
rackham irma bianca miarka snowy |
2.72.1 |
LGPL 2.1+ |
| Uncategorized |
GlimmerHMM |
None |
rackham irma bianca snowy |
3.0.4 |
Open Source, licence file in cluded |
| Uncategorized |
GMP |
GMP |
rackham bianca miarka snowy |
6.3.0 |
LGPL v3; GPL v2 |
| Uncategorized |
go |
go |
rackham bianca miarka snowy |
1.11.5, 1.20.3 |
Go licence |
| Uncategorized |
GoogleCloudSDK |
GoogleCloudSDK |
rackham bianca miarka snowy |
447.0.0, 455.0.0 |
None |
| Uncategorized |
grocsvs |
None |
rackham irma bianca snowy |
0.2.5 |
MIT |
| Uncategorized |
gromacs-plumed |
None |
rackham |
2019.4.th |
None |
| Uncategorized |
gromacs-saxs |
None |
rackham |
2020.04-9edbdbc |
None |
| Uncategorized |
gstreamer |
None |
milou |
0.10.31 |
None |
| Uncategorized |
GTDB |
GTDB |
rackham bianca miarka snowy |
R04-RS89, R202, R214.1, R220 |
None |
| Uncategorized |
Gurobi |
Gurobi |
rackham bianca miarka snowy |
9.5.1, 10.0.2, 11.0.3 |
Academic License |
| Uncategorized |
gzip |
gzip |
rackham bianca miarka snowy |
1.12, 1.13 |
GPL v3 |
| Uncategorized |
HG002_Q100_T2T_assembly |
HG002_Q100_T2T_assembly |
rackham bianca miarka snowy |
0.7 |
CC0 |
| Uncategorized |
HHsuite |
None |
None |
2.0.16, 2.0.16~ |
None |
| Uncategorized |
HLA-LA |
None |
rackham irma bianca snowy |
1.0.1-20201001-f636b62 |
None |
| Uncategorized |
hyperqueue |
hyperqueue |
rackham |
0.18.0 |
MIT license |
| Uncategorized |
iGenomes |
None |
rackham irma bianca snowy |
latest |
None |
| Uncategorized |
ImageJ |
ImageJ |
rackham bianca miarka snowy |
1.52j, 1.54g |
None |
| Uncategorized |
IMAP |
None |
rackham irma bianca snowy |
1.0 |
None |
| Uncategorized |
Immcantation |
None |
rackham irma bianca snowy |
4.0.0 |
AGPL-3 |
| Uncategorized |
imputor |
None |
bianca miarka rackham snowy |
20180829 |
None |
| Uncategorized |
InterOp |
None |
bianca miarka rackham snowy |
1.1.4 |
None |
| Uncategorized |
jamovi |
jamovi |
rackham bianca miarka snowy |
2.3.21 |
Mixed |
| Uncategorized |
jansson |
None |
rackham irma bianca snowy |
2.12 |
MIT |
| Uncategorized |
JasPer |
None |
bianca irma rackham snowy |
2.0.14 |
None |
| Uncategorized |
JsonCpp |
JsonCpp |
rackham bianca miarka snowy |
1.9.5 |
Dual Public Domain/MIT |
| Uncategorized |
kermit |
None |
rackham irma bianca snowy |
1.0 |
MIT |
| Uncategorized |
Kraken_data |
None |
bianca irma rackham snowy |
latest |
None |
| Uncategorized |
KrakenUniq_data |
KrakenUniq_data |
rackham irma bianca miarka snowy |
latest |
GPLv3, MIT |
| Uncategorized |
KyotoTycoon |
None |
bianca irma rackham snowy |
stable-20170410 |
None |
| Uncategorized |
Label-Studio |
Label-Studio |
rackham bianca miarka snowy |
1.10.1dev |
Apache-2.0 |
| Uncategorized |
lammps |
None |
rackham |
29Oct2020_gcc_openmpi, 30Jul2016_intel_mkl, 31Mar2017_gcc_openmpi |
None |
| Uncategorized |
libarchive |
libarchive |
rackham bianca miarka snowy |
3.6.2 |
New BSD |
| Uncategorized |
libb2 |
libb2 |
rackham bianca miarka snowy |
0.98.1 |
CC0-1.0 |
| Uncategorized |
libdeflate |
libdeflate |
rackham bianca miarka snowy |
1.19 |
MIT |
| Uncategorized |
libicu |
None |
rackham irma bianca miarka snowy |
5.2-4 |
MIT and UCD and public domain |
| Uncategorized |
liblzma |
None |
milou |
5.2.2 |
None |
| Uncategorized |
librdf |
librdf |
rackham bianca miarka snowy |
1.0.17 |
LGPL 2.1, GPL 2, Apache 2 |
| Uncategorized |
librsvg |
None |
rackham irma bianca snowy |
2.48.4 |
LGPL 2.1 |
| Uncategorized |
libSBML |
libSBML |
rackham bianca miarka snowy |
5.20.2 |
LGPL v2.1 |
| Uncategorized |
libtiff |
libtiff |
rackham bianca miarka snowy |
4.5.0 |
A IS |
| Uncategorized |
libvips |
libvips |
rackham bianca miarka snowy |
8.15.2 |
LGPL-2.1 |
| Uncategorized |
lighter |
None |
bianca irma rackham snowy |
1.1.1 |
None |
| Uncategorized |
LLVM |
None |
rackham irma bianca miarka snowy |
13.0.1 |
Various |
| Uncategorized |
LoFreq |
None |
None |
2.1.2, .lofreq |
None |
| Uncategorized |
longranger-data |
None |
bianca irma rackham snowy |
2.0.0, 2.1.0 |
None |
| Uncategorized |
LRSDAY |
None |
rackham irma bianca snowy |
1.5.0 |
MIT |
| Uncategorized |
LTR_retriever |
None |
rackham irma bianca snowy |
2.9.0 |
GPL v3 |
| Uncategorized |
lz4 |
None |
rackham irma bianca snowy |
1.9.2 |
BSD 2-Clause & GPLv2 |
| Uncategorized |
lzo |
None |
rackham irma bianca snowy |
2.1 |
GPL v2+ |
| Uncategorized |
m4 |
None |
bianca irma milou rackham snowy |
1.4.17 |
None |
| Uncategorized |
mathematica |
None |
rackham snowy |
11.2 |
None |
| Uncategorized |
mauve |
None |
bianca miarka milou rackham snowy |
2015-02-13 |
None |
| Uncategorized |
mesos |
None |
rackham irma bianca snowy |
1.9.0 |
Apache-2.0 |
| Uncategorized |
metaMATE |
None |
rackham irma bianca miarka snowy |
20220327-3cdacd7 |
Other-d |
| Uncategorized |
metaSNV |
None |
rackham irma bianca miarka snowy |
1.0.3, 2.0.1 |
misc free software |
| Uncategorized |
miniconda2 |
None |
irma rackham snowy |
4.5.4 |
None |
| Uncategorized |
miniconda3 |
None |
irma rackham snowy |
4.5.4 |
None |
| Uncategorized |
miniforge |
miniforge |
rackham bianca miarka snowy |
latest |
None |
| Uncategorized |
mlst |
None |
bianca miarka rackham snowy |
2.12 |
None |
| Uncategorized |
MMseqs2_data |
MMseqs2_data |
rackham bianca miarka snowy |
20230125, 20230816, 20240202 |
None |
| Uncategorized |
Moses |
Moses |
rackham bianca miarka snowy |
4.0 |
LGPL v2.1 |
| Uncategorized |
mp-tools |
mp-tools |
rackham bianca miarka snowy |
latest |
None |
| Uncategorized |
MPFR |
MPFR |
rackham bianca miarka snowy |
4.2.1 |
LGPL v3+ |
| Uncategorized |
mpjexpress |
None |
milou |
.mpjexpress, v0.38 |
None |
| Uncategorized |
MultiBUGS |
None |
rackham miarka bianca snowy |
2.0 |
LGPL v3.0 |
| Uncategorized |
MUMPS |
MUMPS |
rackham |
5.5.0, 5.5.0-hybrid |
CeCILL-C license |
| Uncategorized |
nanopolish |
None |
rackham irma bianca snowy |
0.12.0 |
MIT |
| Uncategorized |
ncbi_taxonomy |
None |
rackham irma bianca miarka snowy |
latest |
None |
| Uncategorized |
ncftp |
None |
bianca irma rackham snowy |
3.2.6 |
None |
| Uncategorized |
ncview |
None |
rackham snowy |
2.1.7, 2.1.7-intel-2019b |
GPL 3 license |
| Uncategorized |
ngsF-HMM |
None |
milou |
20160614 |
None |
| Uncategorized |
NINJA |
None |
rackham irma bianca snowy |
0.97-cluster_only |
MIT |
| Uncategorized |
NMRPipe |
None |
rackham irma bianca snowy |
10.4 |
https://www.ibbr.umd.edu/nmrpipe/terms.html |
| Uncategorized |
nullarbor |
None |
bianca miarka rackham snowy |
2.0.20180819 |
None |
| Uncategorized |
octave |
None |
bianca irma rackham snowy |
5.1.0 |
None |
| Uncategorized |
opam |
opam |
rackham irma bianca miarka snowy |
2.1.2 |
LGPL 2.1 with special modifications |
| Uncategorized |
OpenFOAM |
None |
rackham irma bianca snowy |
6, 7, v1912 |
GNU GPLv3 |
| Uncategorized |
OpenJPEG |
OpenJPEG |
rackham bianca miarka snowy |
2.3.0, 2.5.0 |
BSD 2-clause |
| Uncategorized |
openslide |
openslide |
rackham bianca miarka snowy |
4.0.0 |
LGPL |
| Uncategorized |
ORCA |
None |
None |
4.0.1.2, 4.2.1, 5.0.4, 6.0.0, 6.0.1, .4.0.1.2 |
None |
| Uncategorized |
panther |
panther |
rackham bianca miarka snowy |
14.1, 15.0, 17.0, 18.0 |
Custom |
| Uncategorized |
paraview |
None |
None |
5.6, 5.9.1, .paraview_noQT, .paraview_noQT~ |
None |
| Uncategorized |
PCAP |
None |
milou |
PCAP |
None |
| Uncategorized |
pcre2 |
pcre2 |
rackham bianca miarka snowy |
10.42 |
PCRE2 Licence |
| Uncategorized |
PGAP |
None |
rackham irma bianca miarka snowy |
2022-02-10.build5872 |
Mixed |
| Uncategorized |
PHP |
PHP |
rackham bianca miarka snowy |
7.4.32 |
PHP License v.3.0.1 |
| Uncategorized |
PhylogicNDT |
None |
rackham irma bianca miarka snowy |
2020 |
None |
| Uncategorized |
phylophlan |
None |
bianca irma milou rackham snowy |
0.99 |
None |
| Uncategorized |
pigz |
pigz |
rackham bianca miarka snowy |
2.4, 2.8 |
Custom AS IS |
| Uncategorized |
plumed |
None |
rackham irma bianca snowy |
2.6.0, 2.7.1-gcc |
LGPL-3.0 |
| Uncategorized |
pm-tools |
pm-tools |
rackham bianca miarka snowy |
latest |
None |
| Uncategorized |
python_GIS_packages |
python_GIS_packages |
rackham bianca miarka snowy |
3.10.8 |
Various |
| Uncategorized |
python_ML_packages |
python_ML_packages |
snowy |
3.9.5-cpu, 3.9.5-gpu, 3.11.8-cpu, 3.11.8-gpu |
Various |
| Uncategorized |
PyTorch |
PyTorch |
rackham bianca miarka snowy |
1.12.0-cpu |
BSD-modified |
| Uncategorized |
qctool |
None |
rackham bianca irma snowy |
2-5559450, 2-beta |
None |
| Uncategorized |
QoRTs |
None |
rackham irma bianca snowy |
1.3.6 |
MIT |
| Uncategorized |
QuantumESPRESSO |
None |
rackham |
6.7MaX-Release |
GNU GPLv2 |
| Uncategorized |
rawcopy |
None |
rackham irma bianca snowy |
1.1 |
None |
| Uncategorized |
RDKit |
RDKit |
rackham irma bianca miarka snowy |
20220301 |
BSD 3-Clause-d |
| Uncategorized |
readline |
None |
rackham irma bianca miarka snowy |
6.2-11 |
GPL v3 |
| Uncategorized |
rfmix |
None |
bianca irma rackham snowy |
v2 |
None |
| Uncategorized |
Rosetta |
None |
rackham irma bianca snowy |
3.7, 2019.4 |
https://els.comotion.uw.edu/licenses/86 |
| Uncategorized |
RSPt |
None |
rackham |
2019-08-30, 2020-06-10 |
GPL2 license |
| Uncategorized |
rspt |
None |
None |
1951_intel_mkl, 2003_intel_mkl, 2018-03-31_intel_mkl, rspt.tcl |
None |
| Uncategorized |
rust |
rust |
rackham bianca miarka snowy |
1.43.1, 1.67.0, 1.77.0 |
Apache 2.0\, MIT |
| Uncategorized |
sbcl |
None |
None |
1.0.12, .sbcl |
None |
| Uncategorized |
scikit-learn |
None |
rackham irma bianca snowy |
0.22.1 |
BSD 3 |
| Uncategorized |
sda-cli |
sda-cli |
rackham bianca miarka snowy |
0.1.0, 0.1.3 |
AGPL-3.0 |
| Uncategorized |
SDSL |
None |
rackham irma bianca miarka snowy |
2.1.1 |
GPLv3 |
| Uncategorized |
Siesta |
None |
rackham irma bianca snowy |
4.1-b4, 4.1-MaX-1.0 |
GNU GPLv3 |
| Uncategorized |
siesta |
None |
None |
3.2-pl4_intel_mkl, 4.1-b3_intel_mkl, siesta-2018.tcl, siesta.tcl |
None |
| Uncategorized |
silva |
None |
bianca irma rackham snowy |
128, 132, 138.1 |
None |
| Uncategorized |
simpleitk |
None |
rackham irma bianca snowy |
1.2.4 |
Apache 2.0 |
| Uncategorized |
Singular |
None |
rackham irma bianca snowy |
4.1.2 |
GNU GPL |
| Uncategorized |
smoove |
None |
rackham irma bianca snowy |
0.2.5 |
Apache 2.0 |
| Uncategorized |
snp-sites |
None |
bianca irma rackham snowy |
2.4.0 |
None |
| Uncategorized |
snpEff_data |
snpEff_data |
rackham bianca miarka snowy |
5.1, 5.2 |
MIT |
| Uncategorized |
SourceTracker |
None |
bianca miarka rackham snowy |
0.9.5 |
None |
| Uncategorized |
spaceranger-data |
None |
bianca irma rackham snowy |
1.0.0, 2020-A |
None |
| Uncategorized |
spm |
None |
bianca irma rackham |
12 |
None |
| Uncategorized |
SPRKKR |
None |
rackham snowy |
7.7.1, 7.7.3 |
GPL license |
| Uncategorized |
SQuIRE |
None |
rackham irma bianca miarka snowy |
0.9.9.9a-beta, 885bf4d-20190301 |
GPL v3 |
| Uncategorized |
SRPRISM |
None |
rackham irma bianca miarka snowy |
3.2.7 |
Public domain |
| Uncategorized |
SuiteSparse |
SuiteSparse |
rackham bianca miarka snowy |
5.8.1, 7.7.0 |
Multiple |
| Uncategorized |
sumaclust |
None |
bianca irma rackham snowy |
1.0.00 |
None |
| Uncategorized |
sunstudio |
None |
None |
12.1, 12.1u1, .sunstudio |
None |
| Uncategorized |
SvABA |
None |
rackham irma bianca snowy |
1.1.3-20201112-0f60e36 |
GPL v3 |
| Uncategorized |
svviz |
None |
rackham irma bianca snowy |
1.6.4 |
MIT |
| Uncategorized |
swarm |
None |
bianca irma rackham snowy |
1.2.19 |
None |
| Uncategorized |
SymEngine |
None |
rackham irma bianca snowy |
0.7.0 |
MIT |
| Uncategorized |
tapestri |
None |
rackham irma bianca snowy |
2.0.1 |
None |
| Uncategorized |
tcl |
None |
bianca irma rackham snowy |
8.6.8 |
None |
| Uncategorized |
TelomereHunter |
None |
bianca irma rackham snowy |
1.0.4 |
None |
| Uncategorized |
tesseract |
None |
rackham irma bianca snowy |
4.1.3 |
Apache-2.0 |
| Uncategorized |
TEtranscripts |
None |
rackham irma bianca snowy |
2.2.1 |
GPL3 |
| Uncategorized |
totalview |
None |
None |
8.8.0-2, 8.9.2-0, 8.9.2-2, 8.10.0-1, 8.15.0-15, totalview |
None |
| Uncategorized |
turbo |
None |
None |
6.00, 6.01, 6.1, 6.02, .turbo |
None |
| Uncategorized |
turbomole |
None |
bianca irma milou rackham |
7.3 |
None |
| Uncategorized |
umap |
None |
bianca irma rackham snowy |
0.3.7 |
None |
| Uncategorized |
utf8proc |
None |
rackham irma bianca snowy |
2.5.0 |
MIT |
| Uncategorized |
Vampire |
Vampire |
rackham snowy |
6.0 |
GPL |
| Uncategorized |
vasp |
None |
None |
4.6.34_intel_mkl, 4.6_intel_mkl, 5.2.8_intel_mkl, 5.2.11_intel_mkl, 5.2.12_intel_mkl, 5.2_intel_mkl, 5.3.3_intel_mkl, 5.4.1_intel_mkl, 5.4.1_openmpi_intelmkl, 5.4.4_intel_mkl, .vasp_acml, vasp, vasp.save, vasp.tcl, vasp.tcl_2013, vasp.tcl_2014, vasp.tcl_2017, vasp.tcl_2017_intelmpi, vasp.tcl_2017_openmpi, vasp_new |
None |
| Uncategorized |
vasp_acml |
None |
None |
4.6.28, 4.6.34, 4.6.36, .vasp_acml |
None |
| Uncategorized |
vasp_goto |
None |
None |
4.6.28, 4.6.34, 4.6.36, .vasp_goto |
None |
| Uncategorized |
VMD |
VMD |
rackham bianca miarka snowy |
1.9.4-alpha-57 |
University of Illinois Open Source License |
| Uncategorized |
VSCodium |
VSCodium |
rackham bianca miarka snowy |
latest |
MIT |
| Uncategorized |
vtk |
None |
None |
6.1.0, .vtk |
None |
| Uncategorized |
Whisper |
Whisper |
rackham bianca miarka snowy |
0.5.1, 20240930 |
None |
| Uncategorized |
Whisper-gui |
Whisper-gui |
rackham bianca miarka snowy |
0.1, 0.2, 0.3, 0.3.1 |
None |
| Uncategorized |
WhisperX |
WhisperX |
rackham bianca miarka snowy |
3.1.1 |
None |
| Uncategorized |
wine |
wine |
rackham bianca miarka snowy |
7.0 |
None |
| Uncategorized |
WPS |
None |
rackham snowy |
4.1 |
None |
| Uncategorized |
WPS-geog |
None |
rackham snowy |
4 |
Custom open-source AS IS |
| Uncategorized |
WRF |
None |
bianca irma rackham snowy |
4.1.3, 4.1.3-dmpar |
None |
| Uncategorized |
WRFg |
None |
rackham snowy |
3.8.1 |
Custom AS-IS |
| Uncategorized |
XCrySDen |
None |
rackham irma bianca snowy |
1.5.60, 1.6.2 |
GNU GPLv2 |
| Uncategorized |
zig |
zig |
rackham bianca miarka snowy |
0.9.1, 0.11.0 |
MIT |
| Uncategorized |
zsh |
None |
bianca irma rackham snowy |
5.7.1 |
None |
| Uncategorized |
zstd |
zstd |
rackham irma bianca miarka snowy |
1.5.2 |
GPL v2 |