Overview of databases

Many commonly used data sources are stored locally at UPPMAX. This page provides an index to pages where they are described in more detail. Available databases:

• BLAST databases available locally
• NCBI taxonomy databases
• DIAMOND protein alignment databases
• Reference genomes
• 1000-genome project
• Simons Genome Diversity Project datasets
• Other bioinformatics-oriented local data resources

In order for you to access Swegen or 1000-genomes you must first send an email to datacentre@scilifelab.se and ask for access. When they approve you, they will contact UPPMAX and we will grant access to Swegen.