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4-day Introduction to running R, Python, Julia, MATLAB in HPC¶

Materials page¶

• Rendered
• Source

Old¶

• [name=Richel] can we remove this section? It is not relevant for this course
• Source
• Rendered

Topics planning¶

• Julia
• R
• Matlab

Spring 2025¶

Dates¶

• 21 Mar 11.00-12.00 Onboarding
• 24 Mar R
• 25 Mar Matlab
• 26 Mar Julia

Meeting 14 March¶

Agenda

• Status
• Resources
• Login hour

Status¶

• Registrations
  • 42 registrations now
  • Closes on Monday
• Welcome email by reg-closing
• GH pages
  • Can we make this into an issue? BB did a first attempt, then RB volunteers to fix this
  • mermaid OK?
  • Create website breaks
    • This commit is the first that caused an error
    • I could just spot that three files were pushed at the same time. we can check the isolated one, yes
    • Error can be found at here
    • Turns out the error is unrelated to the commit. Instead, this file is the actual cause: the word ‘admonitions’ is (no longer?) accepted. This error has already been fixed.
      • that’s fixed and just a warning that it would not render
    • how do you reach /tmp/sphinx-err-2s6whocg.log
      • Add a line to the CI script create_website.yaml to cat it, e.g.:

- name: Show log
  run: cat /tmp/sphinx-err-2s6whocg.log

Resources¶

• The Rmpi R package does not work on Tetralith: Pedro?
• BC can test other’s exercises if necessary, because he has got not many exercises of that kind
  • let him know!
• next time BC/RB apply for UPPMAX project and add our non-UPPMAX colleagues, (instead of the other way around)

Login hour¶

• Where to discuss to download and extract the tar balls?
  • shown in prereq (votes):
  • [DECIDED] discussed in (optional) login session (votes): BB, BC, PO, RB, RP
  • discussed in the first regular session ‘introduction’ (votes): RB
• Needs some update:
  • The session is at here and has a video
  • [x] who? BC

Recording¶

• Did we decide to do recordings before/after (up to us)??

  • Teacher decides whether to (1) pre-record, (2) live record, (3) post-record

    • BB will upload any video :-)
    • [DECIDED] Votes: BB, RB, RP, PO

  • Or we deciced to do the same everyone

    • pre/post: Vote: BC
    • live:

Preferences:

• BB: live
• BC: pre
• PO: live
• RB: pre
• RP: live

Misc¶

• Schedule OK?
  • Is it OK with the iframe, like https://uppmax.github.io/R-matlab-julia-HPC/matlab/introMatlab.html#schedule
  • [x] BC removes iframe
    • (in future perhaps just include one of the frames)
• Hide information?
  • Every teacher decides :-)
  • extra?
  • drop-down menus
• [x] BC makes language files in the extra materials section

Next meeting¶

- Thursday March 20 15.00 (early fika)¶

Earlier meetings¶

Meeting 14 Feb 13.00

All meetings