Spring 2023

Dates

  • 8-10 February
  • half-days

Meetings

[Zoom URL]

  • [x] 11 Jan 13-14.
  • [x] 18 Jan 13-14
  • [x] 25 Jan 13-14
  • [X] 1 Feb 13-14
  • [ ] 6 Feb 10.15
  • [ ]

Status

  • Python
    • minor fixes
    • mention Conda problems with interaction to other modules
    • summary

  • Julia

    • Some new boxes/images(?)
    • move iJulia to interactive @bclaremar
    • mention -l in batch scripts UPPMAX @bclaremar
    • interactive @bclaremar
    • summary

  • R

    • load_run
      • mention R_packages
    • packages
      • example
      • R_packages on UPPMAX
    • isolated section (short)
      • renv
      • rewrite somewhat (now more or less a plagiarism)

    • Batch

      • examples

        • UPPMAX Parallel
        • UPPMAX Gpu

      • exercise

        • interactive+RStudio
      • restructure
      • example?
        • exercise
        • summary

Exercises on Zoom

  • breakout rooms for specific help
  • silent room

Teachers (at least one per site)

  • Python 8 Feb
    • HPC2N: [name=Birgitte, Pedro]
    • UPPMAX: [name=Björn]
    • helper: [name=Diana]
    • sum: 4 people

  • Julia 9 Feb

    • HPC2N: [name=Pedro]
    • UPPMAX: [name=Björn]
    • helper: [name=Birgitte]
    • sum: 3 people

  • R 10 Feb

    • HPC2N: [name=Birgitte, Pedro]
    • UPPMAX: [name= Matias]
    • helper: [name=Björn]
    • sum: 4 people

Helpers

  • Avail everyday

    • Birgitte
    • Pedro
    • Björn
    • Pavlin

  • Python

    • Diana
    • Pavlin
  • Julia
    • Pavlin
    • Birgitte
  • R
    • Matias
    • Pavlin
    • Björn
    • Pedro

Timings

Python

  • Table is based on 9.00-12.30 and 1x15 + 2x5 min breaks
Topic HPC-Python Suggested timing Comment Teacher
Index intro 5 15 + thinlinc Björn
Intro 30 10 Keep detailed schedule and link to HackMD Birgitte
Load and run 20 20 (can be shorten to 15m perhaps) Birgitte
Packages 16 20 (buffert time) Björn
Packages: Conda 15 15 Björn
Isolated 12+15(site)=27 30 Plan for extra time as we do it together Björn
Batch 28 25 slightly more effective Birgitte
Interactive 15 15 Björn
Exercises ? 20 All
Summary 7 10 Don’t hurry too much Björn
Questions ? 10 All

Julia

  • Table is based on 9.00-12.30 and 1 15 +2 5 min breaks
Topic HPC-Python Suggested shortening Comment Teacher
Index intro 5 10 Move some practical to overview Björn
Intro 30 10 Pedro
Load and run 20 20 (can be shorten to 15m perhaps) Pedro
Isolated 12+15(site)=27 30 Plan for extra time as we do it together Pedro
Packages at UPPMAX 16 20 (buffert time) Björn
Batch 28 25 slightly more effective Pedro
Interactive 15 15 Björn
Exercises ? 20 All
Summary 7 10 Don’t hurry too much Pedro + Björn
Questions ? 10 All

R

Topic HPC-Python Suggested timing Comment Teacher
Index intro 5 10 Move some practical to overview Matias
Intro 30 10 Keep detailed schedule and link to HackMD Matias
Load and run 20 20 (can be shorten to 15m perhaps) Birgitte
Packages 16 20 (buffert time) Matias
Isolated 5-10 renv + mention Conda Matias
Batch 28 25 slightly more effective Birgitte
Interactive 15? Matias
ThinLinc+RStudio 10-15 Matias
Exercises ? 20 All
Summary 7 10 Matias
Questions ? 10 All

Zoom

  • Lecture recorded in one room
  • Exercises splitted into

Microsoft-365

  • 3 seperate pages on Monday

Exercises

  • 1-3 per topic

Homepages

Material type

  • Choose one or several
    • GH pages at UPPMAX [name=Björn]
      • sphinx
      • MkDocs
    • MD on GH
    • PPT/PDF
    • Like Git course??
      • two repos
      • scripts for creating material
    • Exercises…

Homepage for material

  • logo: remove SNIC

Structure of the days 9.00-12.30 (2 breaks)

  • 2 hours lessons?
  • c. 30-45 m with exercises split?
  • ending summary with questions

GH issues

  • Python
    • merge Conda into packages [name=Björn]
    • merge UPPMAX ad HPC2N sections
  • Julia
    • load_run
    • packages
  • R
    • intro
    • load_run
    • packages

Material

Misc

  • in the future
    • rust
  • next HPC-python
    • 12 April
    • Refer back to the package-installation in this current course